Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0302
(697 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0678 + 10346785-10347149,10347665-10347727,10348445-10349477 30 2.0
01_07_0232 + 42182942-42183490,42183593-42183661,42184320-421844... 29 3.5
05_04_0163 + 18652306-18652839,18653785-18653853,18655139-186552... 29 4.7
02_05_1046 - 33740809-33741201,33741359-33741511,33741583-337424... 29 4.7
11_01_0633 - 5075565-5075707,5076777-5076930,5077021-5077182,507... 28 6.2
08_01_1069 + 10916376-10916448,10917331-10918031,10918222-109184... 28 6.2
04_03_0809 + 19896801-19897170,19897265-19897513,19897850-198979... 28 6.2
01_06_0276 - 28084746-28085003,28085103-28085357,28085531-280857... 28 8.1
>03_02_0678 + 10346785-10347149,10347665-10347727,10348445-10349477
Length = 486
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Frame = +2
Query: 317 INANIKNSTDVRFSPFSLL*KNAAALSKMAY---H*HDPVLHFISFAINSGNDFMGSLND 487
++A + N V S + N +AL AY ++ + +SF N + FM LN
Sbjct: 153 VDAKLSNKMKVVVPCSSDVYLNTSALPSKAYFRPEVNETIAELLSFLANHSSPFMVELNP 212
Query: 488 FSISSEKYSF---YYVYFM*KYPI 550
FS K + YY++ + +P+
Sbjct: 213 FSSFQHKKNLSLDYYLFQLMSHPV 236
>01_07_0232 +
42182942-42183490,42183593-42183661,42184320-42184451,
42184547-42184600,42184714-42184758,42185383-42185522,
42185777-42185902,42185985-42186002,42186631-42187276,
42188121-42188843
Length = 833
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 410 H*HDPVLHFISFAINSGNDFMGSLNDFSISSEKYSFYY 523
H H +L + FA+ +GN F+GSL +S S Y+
Sbjct: 348 HNHKLLLSALCFAVRTGNTFLGSLLWVDYASLSISSYF 385
>05_04_0163 +
18652306-18652839,18653785-18653853,18655139-18655270,
18655424-18655477,18655570-18655614,18656166-18656305,
18657107-18657232,18657325-18657361
Length = 378
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 410 H*HDPVLHFISFAINSGNDFMGSL 481
H H VL + FA+ +GN F+GSL
Sbjct: 343 HHHKLVLSALCFAVRTGNTFLGSL 366
>02_05_1046 -
33740809-33741201,33741359-33741511,33741583-33742461,
33742622-33742630
Length = 477
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = +3
Query: 456 LVTILWGHLMTSVSQVKNTVFTMFILCENILYTY*FDCRLWTFTMVELQHSR*NL 620
L ++ G+L S + N + T C+N+ Y F+C T+++L+H + N+
Sbjct: 166 LTRLIIGNLRFGESDIHNVLKT----CQNLQYLRLFNCDSGNLTVLQLEHPQLNV 216
>11_01_0633 -
5075565-5075707,5076777-5076930,5077021-5077182,
5077369-5078271
Length = 453
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = -2
Query: 189 RSVNSY*AMHRCSNLRRVPIFLMKYELHKFSRFTSTVMKITSCNKNQTRKIIICV 25
R V S+ RC L+ + + K + +++IT C +QT ++ ICV
Sbjct: 161 RMVGSFLDFSRCPALQHLEFDRCELPCDKILSESLKLLRITRCKFSQTSRVRICV 215
>08_01_1069 +
10916376-10916448,10917331-10918031,10918222-10918443,
10918526-10919351,10919437-10919574,10920431-10920569,
10920655-10920781,10921895-10921936,10922089-10922160,
10922491-10922589,10922694-10922735,10922947-10923027,
10923129-10923179,10923265-10923346,10923741-10923835,
10924739-10924810,10924907-10925023,10925176-10925244,
10925507-10925573,10925709-10925950
Length = 1118
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -1
Query: 211 RCGLKDKTFGEFVLSDAPVFESQAGTNFSNEIRTTQIFTIYFHGDENNIVQ 59
R GL +F LS + Q+ N +++ ++ TIY H ENN VQ
Sbjct: 399 RKGLLSPNKKDFHLSSISPTKKQSD-NVEDKLSNAELSTIYVHKQENNDVQ 448
>04_03_0809 +
19896801-19897170,19897265-19897513,19897850-19897900,
19898007-19898267,19898427-19898479,19898746-19898887,
19898972-19899226,19899616-19900640
Length = 801
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 116 YFIRKIGTRLRFEHRCIAQYEFTERL 193
+ R++G R R RC+A+Y +T+ L
Sbjct: 618 FLFRQVGPRARRVFRCVARYGYTDAL 643
>01_06_0276 - 28084746-28085003,28085103-28085357,28085531-28085798,
28085948-28086253,28086369-28086643,28087034-28087252,
28087486-28089015,28089236-28089397,28089512-28089666,
28090195-28091064,28091363-28091832,28091917-28091981,
28092105-28092448,28092531-28092710,28092817-28092920,
28093053-28093162,28093648-28093744,28094138-28094238,
28094324-28094476,28094561-28094674,28094795-28094884,
28094960-28095307
Length = 2157
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 145 QAGTNFSNEIRTTQIFTIYFHGDENNIVQ 59
+A + F N+ RT ++ T F GDEN V+
Sbjct: 2000 EASSKFGNDPRTYEVLTKRFIGDENGNVK 2028
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,084,015
Number of Sequences: 37544
Number of extensions: 296268
Number of successful extensions: 481
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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