Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0302
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   2.1  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   3.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.7  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   8.5  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 469 KIVTRVYSKRYKM*DGIVLMVRH 401
           +I+T  YSKRYKM   +  M+ H
Sbjct: 316 QILTYKYSKRYKM--AVAFMLSH 336


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +3

Query: 147 DSNTGASLNTNSPNVLSFKPQRHHNVKAS 233
           D  + +S  + SP++L+ +P + HN + S
Sbjct: 34  DRRSPSSSRSPSPSLLTSQPHQDHNKEKS 62


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = -3

Query: 686  RGQLVSNKNGSFY*YSNSDIDFQISTRVL 600
            RG++  ++ GS+Y   +S +++++  R L
Sbjct: 1057 RGEMSVHRAGSYYGVPHSTLEYKVKERHL 1085


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 14  PSATTQIIILRV*FLLHDVIFITVE 88
           PS+T ++II  + F+LH    + V+
Sbjct: 269 PSSTERMIIANLNFILHLFCLLDVQ 293


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,032
Number of Sequences: 438
Number of extensions: 4171
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)