Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0302
         (697 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g75230.2 68414.m08739 HhH-GPD base excision DNA repair family...    30   1.7  
At1g75230.1 68414.m08740 HhH-GPD base excision DNA repair family...    30   1.7  
At4g11190.1 68417.m01812 disease resistance-responsive family pr...    28   5.1  
At2g33670.1 68415.m04126 seven transmembrane MLO family protein ...    28   6.8  

>At1g75230.2 68414.m08739 HhH-GPD base excision DNA repair family
           protein contains Pfam domain PF00730: HhH-GPD
           superfamily base excision DNA repair protein
          Length = 394

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 378 KTQQLCPRWRTINTIPSYILYRLL 449
           K +QLC +WR   ++ S+ L+RL+
Sbjct: 307 KMEQLCEKWRPYRSVASWYLWRLI 330


>At1g75230.1 68414.m08740 HhH-GPD base excision DNA repair family
           protein contains Pfam domain PF00730: HhH-GPD
           superfamily base excision DNA repair protein
          Length = 391

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 378 KTQQLCPRWRTINTIPSYILYRLL 449
           K +QLC +WR   ++ S+ L+RL+
Sbjct: 307 KMEQLCEKWRPYRSVASWYLWRLI 330


>At4g11190.1 68417.m01812 disease resistance-responsive family
           protein / dirigent family protein similar to dirigent
           protein [Forsythia x intermedia] gi|6694693|gb|AAF25357;
           similar to disease resistance response protein 206-d
           [Pisum sativum] gi|508844|gb|AAB18669
          Length = 184

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -1

Query: 205 GLKDKTFGEFVLSDAPVFESQAGTNFSNEIRTTQIFTIYFHG 80
           GL D +FG+FV+ D PV   Q     S ++   Q F  ++HG
Sbjct: 66  GLGDFSFGKFVIMDNPVTMDQ--NMLSEQVARVQGF-FFYHG 104


>At2g33670.1 68415.m04126 seven transmembrane MLO family protein /
           MLO-like protein 5 (MLO5) identical to MLO-like protein
           5 (AtMlo5) [Arabidopsis thaliana] SWISS-PROT:O22815;
           similar to MLO protein SWISS-PROT:P93766,
           NCBI_gi:1877221 [Hordeum vulgare][Barley]
          Length = 501

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +1

Query: 367 FTLKKRSSFVQDGV-PLTRSRLTFYIVCY 450
           F L   +SFV++ V P  ++R +FY++C+
Sbjct: 199 FRLTHETSFVREHVNPWAKNRFSFYVMCF 227


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,712,395
Number of Sequences: 28952
Number of extensions: 265796
Number of successful extensions: 584
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)