Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0301
         (686 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q54UJ2 Cluster: Putative uncharacterized protein; n=1; ...    34   3.7  
UniRef50_A7FES9 Cluster: ParB family protein; n=1; Yersinia pseu...    33   6.5  

>UniRef50_Q54UJ2 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 651

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 29/101 (28%), Positives = 36/101 (35%), Gaps = 2/101 (1%)
 Frame = -2

Query: 619 VAVVSHRVHRGSRLRKDISLTAYLPTNLCLQTQTNIYILIREAKTLSPFLRKLRVRRSMK 440
           +  V+  +  GS        T   PTN  LQT TN  I +  + +L P L  LR      
Sbjct: 426 IGSVNSGISNGSNGGSSGGSTPLKPTNYPLQTITNTEIQLSPSSSLKPPLSPLRHSSPFS 485

Query: 439 FSTLIE--NIEKKCTMLIFFFK*CIKNTLNQ*RKHTHMHTI 323
              LIE  +I    T            T      H H HTI
Sbjct: 486 EKVLIEKLSINSSTTATTAIATTATATTTTTTTSHHHQHTI 526


>UniRef50_A7FES9 Cluster: ParB family protein; n=1; Yersinia
           pseudotuberculosis IP 31758|Rep: ParB family protein -
           Yersinia pseudotuberculosis IP 31758
          Length = 296

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 27/65 (41%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +1

Query: 79  VNKHKPHV*K-RFVSTRGPAVVEIRL*LIEIKSLYTLFMIVFHSSIITNFAKATL*KNIN 255
           VN+HK  + K  +V+    AV EI   LIE       F  V  ++ ITN  +A L KN N
Sbjct: 235 VNEHKDILVKSNYVNETILAVKEIFKQLIEDDD----FCSVLRNNNITNMPEALLDKNFN 290

Query: 256 KDKQY 270
           KDK Y
Sbjct: 291 KDKNY 295


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 632,113,440
Number of Sequences: 1657284
Number of extensions: 11629498
Number of successful extensions: 22424
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22416
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)