Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0301
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    26   5.9  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    26   5.9  

>SPBC83.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 161

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 185 KVYKLLISINYSRISTTAGP 126
           K YK +++INY  +S+ +GP
Sbjct: 33  KFYKCVLTINYISVSSMSGP 52


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
 Frame = +1

Query: 160 IEIKSLYTLFMIVFH-----SSIITNFAKATL*KNINKDKQYLIYSQFDHKRQEQKF 315
           +++  L +LF I F+     +S+++N A ATL + +     YL Y    HK++   F
Sbjct: 130 MKLPILISLFRICFNLHNSKNSVVSNAAAATLRQIVILVFDYLDYDTLAHKQEADLF 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,732,706
Number of Sequences: 5004
Number of extensions: 53224
Number of successful extensions: 83
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)