Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0301
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0052 + 7827973-7828031,7829012-7829139,7829243-7829305,783...    28   6.0  
09_02_0224 - 5984128-5984923,5985667-5986718,5986800-5987776,598...    28   8.0  

>05_03_0052 +
           7827973-7828031,7829012-7829139,7829243-7829305,
           7830323-7830444,7830557-7830672,7830760-7831567,
           7831800-7832528,7832638-7832859,7833089-7833184,
           7833273-7833467,7834303-7834416,7835368-7835651,
           7836216-7836293,7836326-7836449,7836739-7836786
          Length = 1061

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 416 REEVHNANFFF*IMHKKYIKSIKKTHTHA 330
           RE+   A+F F I H+KYI  +K+   H+
Sbjct: 7   REDATEAHFAFNIWHQKYIGKVKQAVYHS 35


>09_02_0224 -
           5984128-5984923,5985667-5986718,5986800-5987776,
           5988427-5989228,5990966-5991016,5992391-5993464,
           5994458-5994706
          Length = 1666

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -2

Query: 640 VGTCAHGVAVVSHRVHRGSRLRKDISLTAYLPTNLCLQTQTNIY 509
           VGT A+     +   + GS+    + L +YLP+NL     TN +
Sbjct: 633 VGTRANASIEGASSAYSGSKFSPGVGLNSYLPSNLRHVQSTNAF 676


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,440,397
Number of Sequences: 37544
Number of extensions: 294497
Number of successful extensions: 469
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)