Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0301
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77134-2|CAB00873.1|  877|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AC006795-1|AAF59492.2|  435|Caenorhabditis elegans Hypothetical ...    28   7.2  

>Z77134-2|CAB00873.1|  877|Caenorhabditis elegans Hypothetical
           protein R09H10.4 protein.
          Length = 877

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +3

Query: 276 LFSI*PQTSRTKV*QQIVCMCVCFLY*FNVF 368
           L +I P T  T V   I  M VCFL+ +NVF
Sbjct: 675 LETILPATISTSVCTLICMMIVCFLFMYNVF 705


>AC006795-1|AAF59492.2|  435|Caenorhabditis elegans Hypothetical
           protein Y50D4B.7 protein.
          Length = 435

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 174 FVHFVYDCIS*FYNHKFRQGYTIKKY 251
           +V F YD IS  Y+HK + G +++ Y
Sbjct: 258 YVKFTYDIISNTYSHKRQNGSSLEPY 283


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,127,261
Number of Sequences: 27780
Number of extensions: 299611
Number of successful extensions: 538
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)