Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0300
         (715 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8TRR3 Cluster: Predicted protein; n=3; cellular organi...    36   0.99 
UniRef50_A7C6I8 Cluster: Putative nitrite oxidoreductase/nitrate...    34   3.0  
UniRef50_Q92JM8 Cluster: Uncharacterized protein RC0039; n=9; Ri...    34   4.0  
UniRef50_Q6FIN0 Cluster: Similar to sp|P39723 Saccharomyces cere...    33   5.3  

>UniRef50_Q8TRR3 Cluster: Predicted protein; n=3; cellular
           organisms|Rep: Predicted protein - Methanosarcina
           acetivorans
          Length = 542

 Score = 35.9 bits (79), Expect = 0.99
 Identities = 19/74 (25%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
 Frame = -2

Query: 438 LILLKMLSKCIFSNVYQ*IEY*M---YNIRLNIRSDTSQELNPRRYVISQRKLAREMKRL 268
           L+ + +++  +F +V+  + Y +   YNI L ++S T   +N   Y++    + +E+  L
Sbjct: 451 LLFVSIIAMSVFFSVHNMVLYYLLQPYNINLEMKSGTFAIVNSFTYIVCYLAIGKEVPTL 510

Query: 267 -FPTFYNIFYVEYV 229
            F TF ++F + Y+
Sbjct: 511 IFGTFVSVFCIVYI 524


>UniRef50_A7C6I8 Cluster: Putative nitrite oxidoreductase/nitrate
           reductase beta subunit; n=1; Beggiatoa sp. PS|Rep:
           Putative nitrite oxidoreductase/nitrate reductase beta
           subunit - Beggiatoa sp. PS
          Length = 215

 Score = 34.3 bits (75), Expect = 3.0
 Identities = 17/44 (38%), Positives = 27/44 (61%)
 Frame = -2

Query: 357 LNIRSDTSQELNPRRYVISQRKLAREMKRLFPTFYNIFYVEYVH 226
           LN +S+ S++ NP  Y++  RKLA  +   F T  N++Y+  VH
Sbjct: 122 LNTQSEPSED-NPLDYIVKIRKLALPLYPQFGTGPNVYYIPPVH 164


>UniRef50_Q92JM8 Cluster: Uncharacterized protein RC0039; n=9;
           Rickettsia|Rep: Uncharacterized protein RC0039 -
           Rickettsia conorii
          Length = 222

 Score = 33.9 bits (74), Expect = 4.0
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
 Frame = -2

Query: 501 QLRDSELLAVRSCIIKKRKETLILLKMLSKCIFSNVYQ*IEY*MYNIRLNIRSDTSQELN 322
           QL+   +L +R  + K +   L +LKM  K I  NV +   Y M+     +R       N
Sbjct: 68  QLQSRIILLIRKYLGKTKNLKLKMLKMDEKLINKNVAEVSNYLMHQHSKIVRDANKNLTN 127

Query: 321 PRRYVISQRKLAR-EMKRLFPTF--YNIF 244
           P+  +    K AR ++KRL  +F  Y I+
Sbjct: 128 PKDKLQGLTKQARIDLKRLLKSFAVYQIY 156


>UniRef50_Q6FIN0 Cluster: Similar to sp|P39723 Saccharomyces
           cerevisiae YAL047c SPI6 STU2P Interactant; n=1; Candida
           glabrata|Rep: Similar to sp|P39723 Saccharomyces
           cerevisiae YAL047c SPI6 STU2P Interactant - Candida
           glabrata (Yeast) (Torulopsis glabrata)
          Length = 664

 Score = 33.5 bits (73), Expect = 5.3
 Identities = 20/64 (31%), Positives = 32/64 (50%)
 Frame = +3

Query: 498 IEHTGTNRYI*KGQGRKLDYIHRLIILP*TRTVPIHINIF*RPNIHSSRIIFSACYETLM 677
           I +T T+    K Q +K+ Y   +I     R   IH+    R NIH ++++ S C E   
Sbjct: 148 ISYTDTDNGQKKFQEKKVQYTDNIIATDVHRHEVIHLPRTLRQNIHPNKLLSSECLEIKK 207

Query: 678 SKIN 689
           SK++
Sbjct: 208 SKLD 211


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 591,875,649
Number of Sequences: 1657284
Number of extensions: 10454816
Number of successful extensions: 25080
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25078
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57438021881
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)