Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0300
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    27   2.0  
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    27   2.7  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    27   2.7  
SPBC3B9.06c |apg3||autophagy associated protein Apg3 |Schizosacc...    27   3.5  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    26   4.7  
SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit C...    26   6.1  
SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomy...    25   8.1  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    25   8.1  

>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 587 SLREDNKSVNVIEFPTLSFSDIAISSRVLN 498
           S  E+  S N+IEFP + F ++ + S + +
Sbjct: 5   SSHENQSSENIIEFPYVDFEELNVHSNIFS 34


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 7/61 (11%)
 Frame = +2

Query: 521 LYLKRTRSETRLHSPTYYPPLNSDCTHSYQHFLKTKHSQFKDYF-------FCVLRNVNV 679
           L L++T  + +L    Y   + +       HFL    S F D+F       FC+L +  +
Sbjct: 570 LLLRKTALKLKLTDAVYQQEMLNVVQRCVSHFLAINESHFTDFFWPYSQFYFCILSSAII 629

Query: 680 K 682
           K
Sbjct: 630 K 630


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 312 YVISQRKLAREMKRLFPTFYNIFYVEYVH 226
           Y    R+L R   RL PT+Y  FY  + H
Sbjct: 675 YTSLVRELLRIRYRLLPTWYTAFYNSHTH 703


>SPBC3B9.06c |apg3||autophagy associated protein Apg3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 275

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +2

Query: 572 YPPLNSDCTHSYQHFL-KTKHSQFKDYFFCVLRNVNV-KNKSW 694
           +P  + +C    + FL K K      + FCV RN+N+  N+ W
Sbjct: 47  FPTWSWECGDRIRGFLPKDKQYLVTRHVFCVQRNINIGVNEEW 89


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
 Frame = +1

Query: 178 HSYLPE---NYNYSYHEVAMYIFYIK 246
           ++Y+P+   + NY YHE   Y +YI+
Sbjct: 257 YTYMPDESPSANYPYHEAYEYYYYIR 282


>SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit Csn3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 334

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 184 YLPENYNYSYHEVAMYIFYIKYII 255
           Y+P     S+HE A Y F + YII
Sbjct: 143 YIPTTTLTSFHEEAYYSFLLLYII 166


>SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 436

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 166 INKIHSYLPENYNYSYHEVAMYI 234
           IN+    LP+NYN+  H+   +I
Sbjct: 62  INEAIKLLPQNYNFEIHKTIWHI 84


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/35 (31%), Positives = 24/35 (68%)
 Frame = -2

Query: 483  LLAVRSCIIKKRKETLILLKMLSKCIFSNVYQ*IE 379
            L+  ++  IK   + +ILLKML +C+ +++++ +E
Sbjct: 1269 LILDQAYCIKAWPKVVILLKMLKRCLDASLHERLE 1303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,566,891
Number of Sequences: 5004
Number of extensions: 48727
Number of successful extensions: 133
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)