Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0300
         (715 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0437 - 28986459-28986524,28986606-28986731,28986842-289869...    28   6.4  

>02_05_0437 -
           28986459-28986524,28986606-28986731,28986842-28986941,
           28987583-28987660,28987857-28987937,28989488-28989624,
           28989693-28989743,28989785-28989878,28990091-28990260
          Length = 300

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +1

Query: 139 GGL-GRDSFKINKIHSYLPENYNYSYHEVAMYIFYIKYIIERREEAL 276
           GG+  RDS KI + H+ L E+      ++   I + + IIE RE+A+
Sbjct: 182 GGIEARDSGKIPEQHALLAESKRQEVLQLDNEIVFNEAIIEEREQAI 228


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,446,153
Number of Sequences: 37544
Number of extensions: 267905
Number of successful extensions: 572
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)