Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0300
         (715 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35732| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_26476| Best HMM Match : TFIIS_C (HMM E-Value=3.6)                   28   6.5  
SB_54815| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_35732| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 659 RRKNNP*TVNVWSLKNVDMNGYSPSLREDNKSVN 558
           RR+ N  T   WSL      G+SP  RED+ + N
Sbjct: 12  RREENAITKTPWSLHAKSPRGHSPWRREDSINAN 45


>SB_26476| Best HMM Match : TFIIS_C (HMM E-Value=3.6)
          Length = 256

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 143 PPATSPHSKLLVCVFYQDELAVLQDGRRQFDLCIYVSYRL 24
           PP T+PH +   C+F            R++ +C YV Y +
Sbjct: 68  PPFTAPHVRRTSCIFMSSRRVACNHCLRRY-ICKYVPYMM 106


>SB_54815| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 285

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = -2

Query: 447 KETLILLKMLSKCIFSNVYQ*IEY*MYNIRLNIRSD 340
           K++ +LLK L+ CIF N+ +   Y + ++ ++IR D
Sbjct: 136 KKSDVLLKELALCIFGNLTEASRYNLPSLVMSIRRD 171


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,229,205
Number of Sequences: 59808
Number of extensions: 340697
Number of successful extensions: 835
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)