Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0300
         (715 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29580.1 68417.m04217 cytidine deaminase, putative / cytidine...    28   7.1  
At3g46510.1 68416.m05049 armadillo/beta-catenin repeat family pr...    27   9.3  

>At4g29580.1 68417.m04217 cytidine deaminase, putative / cytidine
           aminohydrolase, putative identical to cytidine deaminase
           homolog DesB [Arabidopsis thaliana] GI:4836444, cytidine
           deaminase 9 (CDA9) [Arabidopsis thaliana] GI:5080715;
           similar to cytidine deaminase (CDD) [Arabidopsis
           thaliana] GI:3046700; contains Pfam profile PF00383:
           Cytidine and deoxycytidylate deaminase zinc-binding
          Length = 298

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 175 IHSYLPENYNYSYHEVAMYIFYIKYIIERREEALHLTS*FPL 300
           + +YLP+ Y   Y+EV  Y F+ + + E R   L L +  P+
Sbjct: 140 LSTYLPQKYLSLYNEVPKY-FFARLLDENRNNGLTLINPNPI 180


>At3g46510.1 68416.m05049 armadillo/beta-catenin repeat family
           protein / U-box domain-containing family protein
           contains Pfam domain, PF00514:
           Armadillo/beta-catenin-like repeats and Pfam, PF04564:
           U-box domain
          Length = 660

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -3

Query: 617 KNVDMNGYSPSLREDNKSVNVIEFPTLSFSDIAISSRVLN*G 492
           K+ D++ Y P L    K ++++E P L+   +A+   V + G
Sbjct: 161 KSSDVDAYQPVLERVAKKLHLMEIPDLAQESVALHEMVASSG 202


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,803,398
Number of Sequences: 28952
Number of extensions: 230486
Number of successful extensions: 513
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)