Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0299
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC569.02c |||S. pombe specific UPF0321 family protein 2|Schizo...    31   0.17 
SPCP20C8.02c |||S. pombe specific UPF0321 family protein 1|Schiz...    28   1.2  

>SPCC569.02c |||S. pombe specific UPF0321 family protein
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 113

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -1

Query: 380 IIALFIILC-YIKTLYANFNLTVCFPAKIPVIKTFFI*HLTSHHNLVSF 237
           ++ LF I C +IK + A  NLT    AK+P      + +LT  H +V F
Sbjct: 1   MLLLFCICCAFIKLVLAEVNLTFVDYAKLPPKYAELLANLTDQHGMVLF 49


>SPCP20C8.02c |||S. pombe specific UPF0321 family protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 111

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -1

Query: 380 IIALFIILC-YIKTLYANFNLTVCFPAKIPVIKTFFI*HLTSHHNLVSF 237
           ++ LF I C +IK + A  NLT    AK+P      + +L   H L+ F
Sbjct: 1   MLLLFCICCVFIKLVLAEVNLTFVDYAKLPPNYAELLANLIDQHGLMLF 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,840,065
Number of Sequences: 5004
Number of extensions: 58395
Number of successful extensions: 106
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)