Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0299
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0356 - 20584212-20584628,20584798-20584899,20585658-205857...    28   6.8  

>05_04_0356 -
           20584212-20584628,20584798-20584899,20585658-20585705,
           20586046-20586186,20586315-20586437,20587166-20587252,
           20587630-20587742,20587844-20587943,20588217-20588601,
           20588841-20588917,20589501-20589593,20589697-20589774,
           20590923-20591246
          Length = 695

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 145 RYYDSFCKHIMNFSTYIPGSKTYLGTP 65
           R  DS   +I N   + PGS +Y+GTP
Sbjct: 205 RRKDSSSSYIENNKEFSPGSSSYMGTP 231


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,574,029
Number of Sequences: 37544
Number of extensions: 279934
Number of successful extensions: 386
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)