Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0298
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 0.58
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 27 1.8
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch... 27 1.8
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 26 4.1
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 26 4.1
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc... 26 5.4
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 26 5.4
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.2
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 25 7.2
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c... 25 9.5
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 25 9.5
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 25 9.5
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 25 9.5
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 25 9.5
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 29.1 bits (62), Expect = 0.58
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +1
Query: 397 AKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSA 567
AK S D K + K + A+ PE SK V+ KEE S +++E S+ +
Sbjct: 41 AKQSSKTDVSPKKSK-KEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSES 96
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +1
Query: 400 KSSEIPDAEAKSADI-KVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAII 576
K S+ P+ + + KVEEP+ + ++ + + TV + +E+ P A S
Sbjct: 446 KPSKEPEVKPTTPSASKVEEPSKKRDEDNHQKEETVTQPKREKTPVEKSFPKPASSPVTF 505
Query: 577 PNMVKK 594
VKK
Sbjct: 506 SEDVKK 511
>SPBC30D10.08 |mgm101||mitochondrial nucleoid
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 267
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 452 KNQLLSLKIQKLKYKLPSLKFQKKKNL 532
KN LLS KI + Y+ S+++QK KN+
Sbjct: 40 KNGLLSPKITQRFYQNSSIQYQKDKNI 66
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 336 VFWGYIVLFGLWYSGYLVVTNW 271
VFW +IVL GL+Y Y V ++
Sbjct: 356 VFWIWIVLPGLYYQNYWQVAHF 377
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +1
Query: 418 DAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADS 564
D + I E PA + K + + + S E+PS T EG+ D+
Sbjct: 601 DEYQRQLHIDFENPAVSASE-KLSTEEIIPQESNFEEPSTTKKEGNVDT 648
>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/60 (25%), Positives = 33/60 (55%)
Frame = +1
Query: 454 EPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVESDAAA 633
EP +P+ S T +I+ + + + + GS A++ +++K+ID+ ++ES A+
Sbjct: 483 EPFKRPQSSSAPTILT--DINGDFEMALGASGGSRIVTAVLDSIIKRIDMDYDIESMVAS 540
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1
Query: 424 EAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSAD 561
++K + KVEE ++ D K + ++ KEEK TD++ +AD
Sbjct: 476 DSKETEDKVEETESKEADVKAKETDSIEVDDKEEK---TDSKETAD 518
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 421 AEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSA 558
AEA + D + P K V +VAE ++E + ++E A
Sbjct: 76 AEASTGDASTQSPETSENVVKNSVDESVAEKPEKEDLAVIESEDKA 121
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 25.4 bits (53), Expect = 7.2
Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Frame = +1
Query: 406 SEIPDAEAKSAD-IKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPN 582
+E+P K +K ++P ++P + +T+V+ A ++E +P +D + +
Sbjct: 227 AELPTEPPKQTRFLKSQQPTSEP-NVETQVEEQPALENEESEPEPSDDQF---------D 276
Query: 583 MVKKIDLAPNVE 618
+V+++D+ PNV+
Sbjct: 277 LVEEVDVLPNVD 288
>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 581
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 418 DAEAKSADIKVE-EPAAQPEDSKTEVQATVAEISKEEKP 531
D + +DIK + E + +DSK +V TV EIS +P
Sbjct: 264 DLKDMQSDIKPDVEKSDAMDDSKMKVDYTVNEISNAVQP 302
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 403 SSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGS 555
SS DA AKS + EPA +P + + ++T + EK + TD +
Sbjct: 898 SSSKSDA-AKSIKPQKPEPALKPVEGTADPKSTKRNHQETEKTADTDVSST 947
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 25.0 bits (52), Expect = 9.5
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = +1
Query: 412 IPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAE---GSADSAAIIPN 582
+ DA+AK D + E ++ + +AE+ +E K ++ + I+
Sbjct: 730 LEDADAKVKDEESSEEELMNDEQMLALDEKLAEVFRERKKASNKEKKKNAQETKQQIVQF 789
Query: 583 MVKKIDLAPN 612
VK IDL N
Sbjct: 790 KVKVIDLIDN 799
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/56 (25%), Positives = 23/56 (41%)
Frame = +1
Query: 472 EDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVESDAAAVP 639
E+S + +E+SK KP+ TD + + K +P + AA P
Sbjct: 33 EESLPSILGEKSEVSKPFKPAVTDPSNAKKEINMAIESPSKKATSPKKATPAAVAP 88
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 25.0 bits (52), Expect = 9.5
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +1
Query: 406 SEIPDAEAKSADIKVEEPAA-QPEDSKTEVQATVAEISKEEKPSATDAEGSA 558
S IP E +I VEE +P EV+ T A +E+ P D+E +A
Sbjct: 142 SPIPSPETIHKNIDVEEKETIEPTTPVKEVETT-AHAEEEKGPLTPDSEYAA 192
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.128 0.348
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,030,870
Number of Sequences: 5004
Number of extensions: 32565
Number of successful extensions: 96
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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