Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0298
(651 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF026215-8|AAB71317.1| 415|Caenorhabditis elegans Hypothetical ... 33 0.18
U80442-4|AAB37667.1| 226|Caenorhabditis elegans Hypothetical pr... 32 0.41
AC024136-3|AAF35959.2| 470|Caenorhabditis elegans Hypothetical ... 30 1.2
U23181-6|AAC48204.1| 801|Caenorhabditis elegans Hypothetical pr... 30 1.6
U23523-10|AAP68941.1| 428|Caenorhabditis elegans Troponin t pro... 29 2.2
Z83239-9|CAB05811.1| 517|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z81099-4|CAB03189.1| 517|Caenorhabditis elegans Hypothetical pr... 29 3.8
U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr... 28 5.0
U00025-4|AAN65312.1| 606|Caenorhabditis elegans Hypothetical pr... 28 5.0
U00025-3|AAA50619.1| 804|Caenorhabditis elegans Hypothetical pr... 28 5.0
AB110824-1|BAD80739.1| 606|Caenorhabditis elegans chondroitin p... 28 5.0
AB110823-1|BAD80738.1| 804|Caenorhabditis elegans chondroitin p... 28 5.0
Z66512-5|CAA91327.2| 1245|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z46829-1|CAA86862.1| 375|Caenorhabditis elegans Hypothetical pr... 28 6.6
U28734-1|AAB52603.2| 397|Caenorhabditis elegans Hypothetical pr... 28 6.6
AC006607-9|AAF60368.2| 995|Caenorhabditis elegans Hypothetical ... 28 6.6
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e... 27 8.7
>AF026215-8|AAB71317.1| 415|Caenorhabditis elegans Hypothetical
protein F09G2.9 protein.
Length = 415
Score = 33.1 bits (72), Expect = 0.18
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Frame = +1
Query: 400 KSSEIPDAEAKSADIKV-----EEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADS 564
KS E P E K ++ V +EPAA E+ K + V E KEE P++ +E D
Sbjct: 126 KSEEAPAPEEKKSEEVVAAEEKKEPAAVVEEKKEVPETPVVEDKKEEAPAS--SEEKKDE 183
Query: 565 AAIIPNMVKKIDLAPNVESDAAAVPE 642
+ K AP + ++ A E
Sbjct: 184 PVVNTEEKKDAAEAPAADEESEAAEE 209
>U80442-4|AAB37667.1| 226|Caenorhabditis elegans Hypothetical
protein T20F5.5 protein.
Length = 226
Score = 31.9 bits (69), Expect = 0.41
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +1
Query: 430 KSADIKVEEPAAQPEDSK-TEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLA 606
KSA K+ P+ + ED++ T+ A+ E S + KP T E SAD + ++ + LA
Sbjct: 66 KSASKKLRVPSKESEDTQPTKSDASQTEKSTK-KPPVTLVESSADVTTAVESISSQQQLA 124
Query: 607 P 609
P
Sbjct: 125 P 125
>AC024136-3|AAF35959.2| 470|Caenorhabditis elegans Hypothetical
protein F54A3.6 protein.
Length = 470
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +1
Query: 448 VEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKK 594
VEEP P KT + A + PSA + GS+ + N +KK
Sbjct: 235 VEEPIPPPNTRKTLLGEPPAGAASSSSPSAQSSTGSSTGTSSYQNNIKK 283
>U23181-6|AAC48204.1| 801|Caenorhabditis elegans Hypothetical
protein ZK84.1 protein.
Length = 801
Score = 29.9 bits (64), Expect = 1.6
Identities = 29/121 (23%), Positives = 42/121 (34%)
Frame = +1
Query: 277 SNDEVPAIPEAKKDDIAPEDSDIAXXXXXXXXXXXXXXXXAKSSEIPDAEAKSADIKVEE 456
+++ PA EA D A ++ A A SS +P+ A E
Sbjct: 504 ASEPAPAPIEAPATDAATLETAPAPAAEPAPAAEAAAGYDAPSS-VPEETPAPAPAADET 562
Query: 457 PAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVESDAAAV 636
PA P +T A AE + P+A + +A +A P D P A
Sbjct: 563 PAPAPAAEETPAPAPAAEETPAPAPAAEETPATAPAAEETPAPAPAADETPAPAPAAEET 622
Query: 637 P 639
P
Sbjct: 623 P 623
Score = 27.5 bits (58), Expect = 8.7
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = +1
Query: 397 AKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSA--TDAEGSADSAA 570
A+++E A A +A+ E PA+ P +T A AE + P+A T A + +AA
Sbjct: 684 AQAAEETPAPAPAAE---ETPASAPAAEETPAPAPAAEEAPAPAPAAPETPAPAAEGAAA 740
Query: 571 IIPNMVKKIDLAPNVESDAAA 633
P + D A + ++ A+
Sbjct: 741 PAPIVSSGYDAAQSTDTVVAS 761
>U23523-10|AAP68941.1| 428|Caenorhabditis elegans Troponin t
protein 2, isoform a protein.
Length = 428
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +1
Query: 397 AKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSA 558
A+ E +A A+ A + EEP A E++ E + +EEKP A E A
Sbjct: 21 AEEVEEEEAAAEDAAAEEEEPEAAEEEAPVEEKPKPRPPVQEEKPPAEMTEAEA 74
>Z83239-9|CAB05811.1| 517|Caenorhabditis elegans Hypothetical
protein K08F9.4 protein.
Length = 517
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +1
Query: 466 QPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAP 609
+ E+ + E+Q A+ S+ E PS++ S+DS + KK +AP
Sbjct: 24 EEEEEEEEIQPGPADSSESENPSSSSDSSSSDSDSDSDAAPKKNIIAP 71
>Z81099-4|CAB03189.1| 517|Caenorhabditis elegans Hypothetical
protein K08F9.4 protein.
Length = 517
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +1
Query: 466 QPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAP 609
+ E+ + E+Q A+ S+ E PS++ S+DS + KK +AP
Sbjct: 24 EEEEEEEEIQPGPADSSESENPSSSSDSSSSDSDSDSDAAPKKNIIAP 71
>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical protein
B0207.5 protein.
Length = 3279
Score = 28.3 bits (60), Expect = 5.0
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Frame = +1
Query: 400 KSSEIPDAEAKSADIKV--------EEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGS 555
K SEIPD + +KV E+P + PE+S+ E ++K++K + S
Sbjct: 2869 KGSEIPDEDENGESVKVMKRKEYQIEKPQSMPEESEDE---EFKLLTKKKKMGVIANDPS 2925
Query: 556 ADSAAIIPNMVKK 594
D + II KK
Sbjct: 2926 NDGSEIIKMSKKK 2938
>U00025-4|AAN65312.1| 606|Caenorhabditis elegans Hypothetical
protein PAR2.4b protein.
Length = 606
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +1
Query: 130 VSLAMPVAEEKDVVPAQPIL 189
V++ +PVA EKDV+PA+ +L
Sbjct: 317 VTVVIPVASEKDVLPARKLL 336
>U00025-3|AAA50619.1| 804|Caenorhabditis elegans Hypothetical
protein PAR2.4a protein.
Length = 804
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +1
Query: 130 VSLAMPVAEEKDVVPAQPIL 189
V++ +PVA EKDV+PA+ +L
Sbjct: 515 VTVVIPVASEKDVLPARKLL 534
>AB110824-1|BAD80739.1| 606|Caenorhabditis elegans chondroitin
polymerizing factor-S protein.
Length = 606
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +1
Query: 130 VSLAMPVAEEKDVVPAQPIL 189
V++ +PVA EKDV+PA+ +L
Sbjct: 317 VTVVIPVASEKDVLPARKLL 336
>AB110823-1|BAD80738.1| 804|Caenorhabditis elegans chondroitin
polymerizing factor protein.
Length = 804
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +1
Query: 130 VSLAMPVAEEKDVVPAQPIL 189
V++ +PVA EKDV+PA+ +L
Sbjct: 515 VTVVIPVASEKDVLPARKLL 534
>Z66512-5|CAA91327.2| 1245|Caenorhabditis elegans Hypothetical
protein F52H3.7a protein.
Length = 1245
Score = 27.9 bits (59), Expect = 6.6
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = +1
Query: 424 EAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEK---PSATDAEGSADSAAIIPNMVKK 594
EA ++ VEEP TE A ++ +E K + T A+ A+ + +
Sbjct: 440 EAAASSESVEEPITAVHVEATESAAPADKVHEETKIDSAAETHADAPVVDASPAEDQASE 499
Query: 595 IDLAPNVESDAAA 633
+ AP+VES +A
Sbjct: 500 VTEAPHVESAKSA 512
>Z46829-1|CAA86862.1| 375|Caenorhabditis elegans Hypothetical
protein T14B1.1 protein.
Length = 375
Score = 27.9 bits (59), Expect = 6.6
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +1
Query: 412 IPDAEAKSADIKVEEPAAQPEDSKTEVQATVA-EISKEEKPSATDAEGSADSAAIIPNMV 588
+PD E D +VEEP A+ K V A A E + E +A+ S++ + P+
Sbjct: 1 MPDPEDPGRDEEVEEPLAK----KIRVVAQEAGEDEESEMEKEPNADLSSEEELVAPDAE 56
Query: 589 KKIDLAPNVESDAAA 633
D P ++++A A
Sbjct: 57 ---DFVPEIDNEATA 68
>U28734-1|AAB52603.2| 397|Caenorhabditis elegans Hypothetical
protein C53C9.2 protein.
Length = 397
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 409 EIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAE 549
E + E + + K+EEPAA+ E+ + E + E EE+ + E
Sbjct: 347 EPEEEEEEEEEEKIEEPAAKEEEEEEEEEEEEEEEELEEEEEEEEEE 393
>AC006607-9|AAF60368.2| 995|Caenorhabditis elegans Hypothetical
protein C09E7.7 protein.
Length = 995
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 416 PMLKQNLLILKWKNQLLSLKIQKLKYKLPSLKFQ 517
P L N+LI WK + K ++ KY + LK Q
Sbjct: 199 PKLSLNVLISMWKKEFSDWKDEEFKYFIDFLKSQ 232
>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
mutant phenotypeprotein 1 protein.
Length = 4177
Score = 27.5 bits (58), Expect = 8.7
Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Frame = +1
Query: 406 SEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNM 585
S P+A + D AAQ ED +E Q + E E AE SAA +
Sbjct: 2855 SVAPNASTRGDDTLTTPAAAQVEDQASEDQ-HIEEEPMEVGEDDGAAEAPQSSAATAASS 2913
Query: 586 VKKIDLAPNVESDAAA--VPEIK 648
V + +VE A VPEI+
Sbjct: 2914 VAGTEEIEDVERQAVEDHVPEIQ 2936
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.313 0.128 0.348
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,093,680
Number of Sequences: 27780
Number of extensions: 178321
Number of successful extensions: 537
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
- SilkBase 1999-2023 -