Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0298
(651 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 33 0.12
At5g26200.1 68418.m03118 mitochondrial substrate carrier family ... 32 0.38
At3g49990.1 68416.m05466 expressed protein 31 0.50
At5g63550.1 68418.m07976 expressed protein 31 0.88
At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /... 30 1.2
At1g62480.1 68414.m07050 vacuolar calcium-binding protein-relate... 29 2.0
At1g12080.2 68414.m01397 expressed protein 29 2.0
At2g45800.1 68415.m05696 LIM domain-containing protein similar t... 29 3.5
At1g76810.1 68414.m08938 eukaryotic translation initiation facto... 29 3.5
At4g20260.2 68417.m02960 DREPP plasma membrane polypeptide famil... 28 4.7
At4g20260.1 68417.m02959 DREPP plasma membrane polypeptide famil... 28 4.7
At1g03100.1 68414.m00285 pentatricopeptide (PPR) repeat-containi... 28 4.7
At4g29060.1 68417.m04157 elongation factor Ts family protein sim... 28 6.2
At2g02170.1 68415.m00153 remorin family protein contains Pfam do... 28 6.2
At4g25610.1 68417.m03689 zinc finger (C2H2 type) family protein ... 27 8.2
At1g12080.1 68414.m01396 expressed protein 27 8.2
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 33.5 bits (73), Expect = 0.12
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +1
Query: 415 PDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSA 567
P A AK+ +K ++ ++ +DS +E + +K KP+A D+ S D +
Sbjct: 141 PAAAAKNGSVKAKKESSSEDDSSSEDEPAKKPAAKIAKPAAKDSSSSDDDS 191
Score = 27.5 bits (58), Expect = 8.2
Identities = 19/81 (23%), Positives = 35/81 (43%)
Frame = +1
Query: 307 AKKDDIAPEDSDIAXXXXXXXXXXXXXXXXAKSSEIPDAEAKSADIKVEEPAAQPEDSKT 486
+ DD + EDS+ + S D++ +S D E+PA + D+K
Sbjct: 185 SSSDDDSDEDSEDEKPATKKAAPAAAKAASSSDSSDEDSDEESED---EKPAQKKADTKA 241
Query: 487 EVQATVAEISKEEKPSATDAE 549
+++ E S+ E+ + D E
Sbjct: 242 SKKSSSDESSESEEDESEDEE 262
>At5g26200.1 68418.m03118 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 342
Score = 31.9 bits (69), Expect = 0.38
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = -2
Query: 221 LTESSILGATSRIG*AGTTSFSSATGIAKLTAAKA 117
+T+SS+ AT R+G + TTS + A G A LT+A A
Sbjct: 112 ITKSSVGQATVRLGLSDTTSLAVANGAAGLTSAVA 146
>At3g49990.1 68416.m05466 expressed protein
Length = 502
Score = 31.5 bits (68), Expect = 0.50
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +1
Query: 412 IPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAE 549
+P A+ D+K E P A+P KT Q + E K+E+ +A AE
Sbjct: 422 LPGRRAEQTDVKAEIPKAEPIKRKTHGQESKEE--KKERKNAVKAE 465
>At5g63550.1 68418.m07976 expressed protein
Length = 530
Score = 30.7 bits (66), Expect = 0.88
Identities = 18/67 (26%), Positives = 34/67 (50%)
Frame = +1
Query: 409 EIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMV 588
E D + + +++VE+P+ + SK V+ + K+++PS A+GSA S +
Sbjct: 320 EKTDTDDEKDEVEVEKPSKKKSSSKKTVEESSGSKGKDKQPS---AKGSARSGEKSSKQI 376
Query: 589 KKIDLAP 609
K +P
Sbjct: 377 AKSTSSP 383
>At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein contains Pfam
PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
CRAL/TRIO, N-terminus; similar to SEC14-like protein 2
(Alpha-tocopherol associated protein) (TAP) (bTAP)
(Fragment) (SP:P58875) {Bos taurus}
Length = 683
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1
Query: 415 PDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSA 537
P E K + K EE + E+ KTE ++ AE +EEK +A
Sbjct: 123 PVKEEKVEEKKTEETEEKKEEVKTEEKSLEAETKEEEKSAA 163
>At1g62480.1 68414.m07050 vacuolar calcium-binding protein-related
contains weak similarity to vacuolar calcium binding
protein [Raphanus sativus] gi|9049359|dbj|BAA99394
Length = 152
Score = 29.5 bits (63), Expect = 2.0
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = +1
Query: 286 EVPAIPEAKKDDIAPEDSDIAXXXXXXXXXXXXXXXXAKSSEIPDAEAKSADIKV-EEPA 462
E P + E KKD+ AP ++ + K E+ + + + A + V EE
Sbjct: 73 ETPEVVEIKKDEEAPVETPVV---VEDESKTEEVVEAKKEEEVEEKKTEEAPVVVEEEKK 129
Query: 463 AQPEDSKTEVQATV-AEISKEEK 528
+ E+ K V+A+V A + K ++
Sbjct: 130 PEAEEEKPAVEASVTAPVEKADE 152
>At1g12080.2 68414.m01397 expressed protein
Length = 138
Score = 29.5 bits (63), Expect = 2.0
Identities = 21/81 (25%), Positives = 40/81 (49%)
Frame = +1
Query: 403 SSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPN 582
+ E+ EA+ D + E+ + +D KTEV + +EEK AE ++ A++
Sbjct: 57 NEEVVVEEAEKKDEETEKKTEE-KDEKTEVITETPVVEEEEK----KAEEVTETPAVVEE 111
Query: 583 MVKKIDLAPNVESDAAAVPEI 645
KK ++ +++ AA E+
Sbjct: 112 -EKKTEVVEEKQTEVAAAEEV 131
>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 226
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1
Query: 283 DEVPAIPEAKKDDIAPE 333
D+ +IPEAK+DD APE
Sbjct: 197 DDTASIPEAKEDDAAPE 213
>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to IF2
protein [Drosophila melanogaster] GI:7108770; contains
Pfam profile PF03144: Elongation factor Tu domain 2
Length = 1294
Score = 28.7 bits (61), Expect = 3.5
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Frame = +1
Query: 397 AKSSEIPDAEAKSADIKVEEPAAQPED-------SKTEVQATVAEISKEEKPSATDAEGS 555
A E P AE ++ VEE AAQPE + E + A K++K + E
Sbjct: 308 AALGETPAAERPASSTPVEEKAAQPEPVAPVENAGEKEGEEETAAAKKKKKKKEKEKEKK 367
Query: 556 ADSAAIIPNMVK 591
A +AA + V+
Sbjct: 368 AAAAAAATSSVE 379
>At4g20260.2 68417.m02960 DREPP plasma membrane polypeptide family
protein contains Pfam profile: PF05558 DREPP plasma
membrane polypeptide
Length = 225
Score = 28.3 bits (60), Expect = 4.7
Identities = 23/78 (29%), Positives = 34/78 (43%)
Frame = +1
Query: 409 EIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMV 588
E+ E ++K EEPA E +KTE T E KEE T +G A++
Sbjct: 133 EVKTKEIPVEEVKAEEPAKTEEPAKTE--GTSGE--KEEIVEET-KKGETPETAVVEEKK 187
Query: 589 KKIDLAPNVESDAAAVPE 642
+++ + A AV E
Sbjct: 188 PEVEEKKEEATPAPAVVE 205
>At4g20260.1 68417.m02959 DREPP plasma membrane polypeptide family
protein contains Pfam profile: PF05558 DREPP plasma
membrane polypeptide
Length = 225
Score = 28.3 bits (60), Expect = 4.7
Identities = 23/78 (29%), Positives = 34/78 (43%)
Frame = +1
Query: 409 EIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMV 588
E+ E ++K EEPA E +KTE T E KEE T +G A++
Sbjct: 133 EVKTKEIPVEEVKAEEPAKTEEPAKTE--GTSGE--KEEIVEET-KKGETPETAVVEEKK 187
Query: 589 KKIDLAPNVESDAAAVPE 642
+++ + A AV E
Sbjct: 188 PEVEEKKEEATPAPAVVE 205
>At1g03100.1 68414.m00285 pentatricopeptide (PPR) repeat-containing
protein low similarity to CRP1 [Zea mays] GI:3289002;
contains Pfam profile PF01535: PPR repeat
Length = 793
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 419 MLKQNLLILKWKNQLLSLKIQKLKYKLPSLKFQKKKNL 532
M K+N+ + K+K ++L LK K YK + K Q + L
Sbjct: 740 MEKKNMFVDKYKYRMLFLKYHKTAYKGKAPKVQSESQL 777
>At4g29060.1 68417.m04157 elongation factor Ts family protein
similar to SP|P35019 Elongation factor Ts (EF-Ts)
{Galdieria sulphuraria}; contains Pfam profiles PF00627:
UBA/TS-N domain, PF00889: Elongation factor TS, PF00575:
S1 RNA binding domain
Length = 953
Score = 27.9 bits (59), Expect = 6.2
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Frame = +1
Query: 415 PDAEAKSADIKVEEPAAQP-EDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVK 591
P+AEA +VEE P E + EV ++ EE+ AT AE D + +
Sbjct: 373 PEAEASVTSAEVEESVCVPAEVTSEEVPSSETPKVVEEEVIATKAE---DDSPEKEEQTE 429
Query: 592 KIDLAPNVESDAAAVPEIKT 651
+ A E +PE K+
Sbjct: 430 TLAAAAEAEEVVPPIPETKS 449
>At2g02170.1 68415.m00153 remorin family protein contains Pfam
domain, PF03763: Remorin, C-terminal region
Length = 486
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +1
Query: 418 DAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSA 567
+AE K ++KVE + +D + AT+ E EEK +A +A+ +A
Sbjct: 411 EAEMKKTEVKVERIKGRAQDRLMKKLATI-ERKAEEKRAAAEAKKDHQAA 459
>At4g25610.1 68417.m03689 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 586
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 385 FLRFSLQERFPVSRYRSLLGLYRPFWPLV 299
FL F E PV ++ L L RP WPL+
Sbjct: 25 FLSFPRPENTPVQLFQLLHTLERPGWPLL 53
>At1g12080.1 68414.m01396 expressed protein
Length = 104
Score = 27.5 bits (58), Expect = 8.2
Identities = 21/82 (25%), Positives = 39/82 (47%)
Frame = +1
Query: 400 KSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIP 579
K+ E E + D + E+ + +D KTEV + +EEK AE ++ A++
Sbjct: 22 KTVEETVVETEKKDEETEKKTEE-KDEKTEVITETPVVEEEEK----KAEEVTETPAVVE 76
Query: 580 NMVKKIDLAPNVESDAAAVPEI 645
KK ++ +++ AA E+
Sbjct: 77 E-EKKTEVVEEKQTEVAAAEEV 97
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.313 0.128 0.348
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,520,000
Number of Sequences: 28952
Number of extensions: 166028
Number of successful extensions: 410
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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