Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0297
(493 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 31 0.66
07_03_0846 - 21983581-21986055 29 1.5
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581 29 1.5
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 29 1.5
07_03_1086 + 23858419-23859423,23859527-23859610 29 2.7
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960... 28 4.7
07_03_0626 + 20060013-20060273,20061017-20061274 27 6.2
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56... 27 6.2
01_01_1235 - 10017728-10017766,10018891-10019352 27 6.2
08_02_1485 - 27466761-27467753 27 8.2
08_02_1081 + 24215323-24215335,24215450-24215572,24216241-242164... 27 8.2
01_07_0124 + 41212728-41212922,41215156-41215210,41215336-412171... 27 8.2
01_06_0738 - 31598545-31598751,31598848-31598934,31598991-315990... 27 8.2
01_05_0118 + 18335065-18335553 27 8.2
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.7 bits (66), Expect = 0.66
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +2
Query: 170 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 304
A+ A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.5 bits (63), Expect = 1.5
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = -2
Query: 312 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 163
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
Length = 311
Score = 29.5 bits (63), Expect = 1.5
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 83 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 181
G LV L R GG SAG+C S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 29.5 bits (63), Expect = 1.5
Identities = 18/52 (34%), Positives = 22/52 (42%)
Frame = -2
Query: 465 TDRSTYAALPSTTPRQERKSXTDYSEPXHRTELYPDLRSRDARVKKKTDSID 310
+D S Y PS TP ER +D P Y R+RD K+ S D
Sbjct: 357 SDDSIYGK-PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407
>07_03_1086 + 23858419-23859423,23859527-23859610
Length = 362
Score = 28.7 bits (61), Expect = 2.7
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Frame = +2
Query: 23 LLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA-----SKAEASLAES 187
LL CD N A + LVHAL AA A +A L A AS+ +
Sbjct: 129 LLNLSICDENKAIIVEAGAIRPLVHALKSAASPAARENAACALLRLSQLDGSAAASIGRA 188
Query: 188 GKDMLTVEPRESGGSK 235
G L V E+GG++
Sbjct: 189 GAIPLLVSLLETGGAR 204
>03_05_0951 +
29093962-29094373,29095291-29095388,29095689-29096087,
29096999-29097724,29097802-29097968,29098046-29098311,
29098396-29098581,29099072-29099346,29099435-29099683
Length = 925
Score = 27.9 bits (59), Expect = 4.7
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = +2
Query: 161 KAEASLAESGKDMLTVEP-RESGGSKQCDFTSRVSHSKRETR-RRSPFGSRRSMLSVFFL 334
K+ AS A G D P R GG K+ S + SKR + R + F +L L
Sbjct: 4 KSSASAAHQGGDAPAEAPRRRGGGGKRKSGGSSFTPSKRHAKERNAAFHVPPHLLHSGPL 63
Query: 335 TRASR 349
TRA+R
Sbjct: 64 TRAAR 68
>07_03_0626 + 20060013-20060273,20061017-20061274
Length = 172
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -3
Query: 182 RLGWLRP*RRSGIIP 138
RLGWLRP R S ++P
Sbjct: 32 RLGWLRPSRLSAVVP 46
>02_01_0083 -
566201-567127,567223-567464,567623-567880,568173-568298,
568420-568489
Length = 540
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 189 ARICSLWSPESREALNNVTLLVAFRIQNARRDVEA 293
AR C W PESR ++ V ++A ++R+ A
Sbjct: 449 ARECLQWEPESRPTMSEVVQILATIAPSSRKHAAA 483
>01_01_1235 - 10017728-10017766,10018891-10019352
Length = 166
Score = 27.5 bits (58), Expect = 6.2
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Frame = +2
Query: 104 GRAAGGAKLPSAGLCLNASKAEASLAESGKDM--LTVEPR---ESGGSKQCDFTSRVSHS 268
G GGA + + L+A+ L G + L + PR S + TS + S
Sbjct: 66 GEDGGGAGVRACSSDLSAAAFADELFREGALLRPLKLPPRLQTPSASAAASAATSPTAAS 125
Query: 269 KRETRRRSPFGSRRS 313
K + RSPF SRRS
Sbjct: 126 KAASSSRSPFASRRS 140
>08_02_1485 - 27466761-27467753
Length = 330
Score = 27.1 bits (57), Expect = 8.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 228 PPDSRGSTVSISLPDSARLASALEAFRHNPA 136
PP + G +S +P A LA++L + NPA
Sbjct: 39 PPSATGPVLSRDVPLDASLATSLRLYLPNPA 69
>08_02_1081 +
24215323-24215335,24215450-24215572,24216241-24216489,
24218517-24218720,24218864-24218993,24219610-24219679,
24219766-24219900,24219996-24220209,24220314-24220455,
24220630-24220851,24220997-24221195
Length = 566
Score = 27.1 bits (57), Expect = 8.2
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +2
Query: 221 SGGSKQCDFTSRVSHSKRETRRRSPFGSRRSML 319
S G+ Q T R HS E RRRS R +L
Sbjct: 212 SAGTDQMPNTPRSKHSATEQRRRSKINDRFQLL 244
>01_07_0124 +
41212728-41212922,41215156-41215210,41215336-41217128,
41217363-41217521,41217883-41218054,41218173-41218471,
41219060-41219368
Length = 993
Score = 27.1 bits (57), Expect = 8.2
Identities = 16/60 (26%), Positives = 31/60 (51%)
Frame = -2
Query: 330 KKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAF 151
KKT ++ + P+ R + + + +V S C D G+ ++ + R+ASA++AF
Sbjct: 566 KKTMAVVIASPSAGGRPRAFLKGASEVVLSRCSLVLDGTGNVEKLTDAKAKRVASAIDAF 625
>01_06_0738 -
31598545-31598751,31598848-31598934,31598991-31599049,
31599139-31599277,31599278-31599337,31600504-31600632
Length = 226
Score = 27.1 bits (57), Expect = 8.2
Identities = 21/98 (21%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Frame = -2
Query: 408 SXTDYSEPXHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLE 229
S T Y+ T + +++ R AR + + + I ++ ++R+ E +++K E
Sbjct: 122 SLTSYAREVAGTAIIYEVQ-RSARAEARKEEIRKQEIEARKQRIEELASEVQMMKKRISE 180
Query: 228 P----------PDSRGSTVSISLPDSARLASALEAFRH 145
P+SRGST + + ++ A+A +H
Sbjct: 181 IERQQDERRALPNSRGSTTATPMQAASAAAAAAAKAKH 218
>01_05_0118 + 18335065-18335553
Length = 162
Score = 27.1 bits (57), Expect = 8.2
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +2
Query: 179 AESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGSR 307
A+ G + V P +GG+++ + ++ K T RR+ FG+R
Sbjct: 18 AQDGHRLPDVAPA-AGGTREPEHARLIARRKESTYRRTAFGNR 59
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,384,267
Number of Sequences: 37544
Number of extensions: 310038
Number of successful extensions: 929
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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