Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0297
(493 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_41266| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_12162| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_40185| Best HMM Match : WD40 (HMM E-Value=0) 28 3.6
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_34584| Best HMM Match : Drf_FH1 (HMM E-Value=0.99) 28 4.8
SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11) 27 6.4
SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_56155| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
SB_6472| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
>SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1560
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -2
Query: 321 DSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDS 217
DS ++DP G+RR++ F E R V L+ D+
Sbjct: 101 DSPPIKDPPGVRRKIEEFTIEQRAVNKRRLDLLDT 135
>SB_41266| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 660
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -2
Query: 435 STTPRQERKSXTDYSEPXHRTELYPDLRSRDARVKKKTDSIDLRDP 298
STT E +S TD EP + + + +RD R ++ D RDP
Sbjct: 195 STTETSETQSSTDTREPVNNRDTRETVNNRDTR--DTVNNRDTRDP 238
>SB_12162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 268
Score = 28.3 bits (60), Expect = 3.6
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Frame = +2
Query: 50 NTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNAS-KAEASLAESGKDMLTVEPRESG 226
+TA E++ +F + A G K+ +A + + K + + AE+G D+L
Sbjct: 184 DTANAEKSGNF-KMDTAKSEIGGNFKMDTAKSEIGGNFKMDTANAENGVDVLKTSASMVF 242
Query: 227 GSKQCDFTSRVSHSKRETRR 286
++Q TS++ ++++TRR
Sbjct: 243 NNEQFSATSQIKGTEKDTRR 262
>SB_40185| Best HMM Match : WD40 (HMM E-Value=0)
Length = 503
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 55 CSVREEPQFRTFGSCTRPSG 114
CS R P+ R F +CT PSG
Sbjct: 437 CSARTPPRRRPFTACTSPSG 456
>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2735
Score = 27.9 bits (59), Expect = 4.8
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 206 VEPRESGGSK-QCDFTSRVSHSKRETRRRSPFGSRRSMLSVFFLTRASRLRRS 361
+E +S G + +CD TSR+S R F ++R++ F + S RS
Sbjct: 2037 IEDLDSFGQRDRCDGTSRISRQSRSRIETDVFPTKRNLSHSFKDVKTSESERS 2089
>SB_34584| Best HMM Match : Drf_FH1 (HMM E-Value=0.99)
Length = 217
Score = 27.9 bits (59), Expect = 4.8
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +3
Query: 93 FMHSAERPVVRSYHPRDYA*TPLRPKPA*PNPARICSLWSPESREALNNVTLLVAFRI-- 266
F H + P+ R +HP PL P+ + + ++ PESREA V V RI
Sbjct: 153 FHHESNEPLPRMFHPESN--EPL-PRMFTESNEHLPRMFHPESREAAVVVKPFVPVRIAH 209
Query: 267 QNA 275
QNA
Sbjct: 210 QNA 212
>SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)
Length = 1692
Score = 27.5 bits (58), Expect = 6.4
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Frame = -2
Query: 300 PNGLRRRVSRFECET----RLVKSHCLEPPDSRGSTVSISLPDSARLASALEAF 151
PN LR R S F L CL PP++ G I L D + LA A+
Sbjct: 1246 PNDLRGRWSDFFSNLFQLEHLELDRCLRPPNAEGKPWLIILSDGSDLAYGFAAY 1299
>SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 302
Score = 27.5 bits (58), Expect = 6.4
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = -2
Query: 276 SRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPAD 133
+R+ E +L + H L PP +S SA +SA F P D
Sbjct: 35 ARYRAEAQLNRRHGLSPPTPPEGISPLSSSSSASSSSAASPFHTIPRD 82
>SB_56155| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 452
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 54 LLSTRGTAVSDIWFMHSAERPVVRSYHPRDY 146
LLS G A++D+ +H A+ P +Y P Y
Sbjct: 151 LLSAFGMALADV--VHEAQEPCAHTYEPDSY 179
>SB_6472| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 91
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -2
Query: 456 STYAALPSTTPRQERKSXTDYSE-PXHRTELYPD 358
S ++ P+T PR +R+S T S+ H + L PD
Sbjct: 2 SAFSYHPNTIPRSDRRSRTGISQRHRHTSSLTPD 35
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,198,152
Number of Sequences: 59808
Number of extensions: 334802
Number of successful extensions: 3009
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3009
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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