Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0297
         (493 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ178242-1|ABA18181.1|  578|Caenorhabditis elegans Frizzled homo...    29   1.8  
AF016413-2|ABA54421.1|  578|Caenorhabditis elegans Caenorhabditi...    29   1.8  
AF016413-1|ABA54422.1|  550|Caenorhabditis elegans Caenorhabditi...    29   1.8  
AB026113-1|BAA84678.1|  550|Caenorhabditis elegans Cfz2 protein.       29   1.8  
Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical pr...    28   4.2  
U97002-9|AAB52261.2|  985|Caenorhabditis elegans Hypothetical pr...    27   7.4  
L37867-1|AAA63155.1|  319|Caenorhabditis elegans homeodomain pro...    27   7.4  
Z93376-2|CAD59146.2|  578|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z82279-4|CAD59150.2|  578|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AL132949-42|CAD59173.2|  578|Caenorhabditis elegans Hypothetical...    27   9.8  
AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical ...    27   9.8  

>DQ178242-1|ABA18181.1|  578|Caenorhabditis elegans Frizzled homolog
           protein.
          Length = 578

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = -1

Query: 466 NRSQHVRCSTEHN-TPPGTEVVYRLFRAXTSN*VISGPSEP*CTC*EKNR*HRSPRSKWA 290
           +++Q+   +  HN +P G EV      +   N VI+GPSE  CTC +  +   S +SK  
Sbjct: 157 HKNQNQNQNQNHNYSPDGPEVGI----SKIDNEVIAGPSECQCTCNQPFQFVASEKSKVG 212

Query: 289 STSRLAF 269
           + +  A+
Sbjct: 213 NVTNCAY 219


>AF016413-2|ABA54421.1|  578|Caenorhabditis elegans Caenorhabditis
           frizzled homologprotein 2, isoform a protein.
          Length = 578

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = -1

Query: 466 NRSQHVRCSTEHN-TPPGTEVVYRLFRAXTSN*VISGPSEP*CTC*EKNR*HRSPRSKWA 290
           +++Q+   +  HN +P G EV      +   N VI+GPSE  CTC +  +   S +SK  
Sbjct: 157 HKNQNQNQNQNHNYSPDGPEVGI----SKIDNEVIAGPSECQCTCNQPFQFVASEKSKVG 212

Query: 289 STSRLAF 269
           + +  A+
Sbjct: 213 NVTNCAY 219


>AF016413-1|ABA54422.1|  550|Caenorhabditis elegans Caenorhabditis
           frizzled homologprotein 2, isoform b protein.
          Length = 550

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = -1

Query: 466 NRSQHVRCSTEHN-TPPGTEVVYRLFRAXTSN*VISGPSEP*CTC*EKNR*HRSPRSKWA 290
           +++Q+   +  HN +P G EV      +   N VI+GPSE  CTC +  +   S +SK  
Sbjct: 157 HKNQNQNQNQNHNYSPDGPEVGI----SKIDNEVIAGPSECQCTCNQPFQFVASEKSKVG 212

Query: 289 STSRLAF 269
           + +  A+
Sbjct: 213 NVTNCAY 219


>AB026113-1|BAA84678.1|  550|Caenorhabditis elegans Cfz2 protein.
          Length = 550

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = -1

Query: 466 NRSQHVRCSTEHN-TPPGTEVVYRLFRAXTSN*VISGPSEP*CTC*EKNR*HRSPRSKWA 290
           +++Q+   +  HN +P G EV      +   N VI+GPSE  CTC +  +   S +SK  
Sbjct: 157 HKNQNQNQNQNHNYSPDGPEVGI----SKIDNEVIAGPSECQCTCNQPFQFVASEKSKVG 212

Query: 289 STSRLAF 269
           + +  A+
Sbjct: 213 NVTNCAY 219


>Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical
           protein T02E9.3 protein.
          Length = 763

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = +2

Query: 80  FGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRV 259
           FG L H  G       LP   +    S+  + ++++G    +   R+SGGSK+   +   
Sbjct: 212 FGQLTHRGGERERRHSLPRVIIEEVRSRRGSRMSQTGSQSGSPTRRQSGGSKERSPSQPD 271

Query: 260 SH--SKRETRRRSP 295
            H  +K + R RSP
Sbjct: 272 IHIVAKPQQRWRSP 285


>U97002-9|AAB52261.2|  985|Caenorhabditis elegans Hypothetical
           protein K09H11.1 protein.
          Length = 985

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 368 YIRTFGAVMHVLRKKPIASISAIQMGFDVASRVLNA 261
           YIRT     +VLRKKP  S+       D   +++NA
Sbjct: 264 YIRTVRGSQYVLRKKPSGSLLPKAHQVDREFKIMNA 299


>L37867-1|AAA63155.1|  319|Caenorhabditis elegans homeodomain
           protein protein.
          Length = 319

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -2

Query: 192 LPDSARLASALEAFRHNPADGSFXXXXXXXXX*TKCPKLRFLS 64
           LPD + ++S+L    HNP   ++          TK PKL  LS
Sbjct: 37  LPDDS-ISSSLAPLTHNPYAFNYSIPLPPTDITTKLPKLELLS 78


>Z93376-2|CAD59146.2|  578|Caenorhabditis elegans Hypothetical
           protein E01F3.1b protein.
          Length = 578

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +3

Query: 153 TPLRPKPA*PNPARICSLWSPESREALNN---VTLLVAFRIQNARRDVEAHLD 302
           T L   PA PN AR  S W  E+  + NN     + +  +I  +R++   H+D
Sbjct: 119 TGLPTVPAEPNKARSSSYWKTEASPSNNNEHETPVDLLRKISVSRKESGTHVD 171


>Z82279-4|CAD59150.2|  578|Caenorhabditis elegans Hypothetical
           protein E01F3.1b protein.
          Length = 578

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +3

Query: 153 TPLRPKPA*PNPARICSLWSPESREALNN---VTLLVAFRIQNARRDVEAHLD 302
           T L   PA PN AR  S W  E+  + NN     + +  +I  +R++   H+D
Sbjct: 119 TGLPTVPAEPNKARSSSYWKTEASPSNNNEHETPVDLLRKISVSRKESGTHVD 171


>AL132949-42|CAD59173.2|  578|Caenorhabditis elegans Hypothetical
           protein E01F3.1b protein.
          Length = 578

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +3

Query: 153 TPLRPKPA*PNPARICSLWSPESREALNN---VTLLVAFRIQNARRDVEAHLD 302
           T L   PA PN AR  S W  E+  + NN     + +  +I  +R++   H+D
Sbjct: 119 TGLPTVPAEPNKARSSSYWKTEASPSNNNEHETPVDLLRKISVSRKESGTHVD 171


>AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical
            protein Y32B12B.4 protein.
          Length = 1528

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 237  NVTLLVAFR-IQNARRDVEAHLDRGDRCYRFFS*HVHHGSEGPDITQF 377
            N   L+AF  +  A+ D EAHL+  +RC R      H G    +I QF
Sbjct: 1134 NEKFLLAFALVLRAKYDHEAHLNLVNRCMRNVC-KTHFGETVDEIFQF 1180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,541,861
Number of Sequences: 27780
Number of extensions: 237304
Number of successful extensions: 762
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)