Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0297
         (493 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53440.2 68416.m05898 expressed protein                             30   0.97 
At3g53440.1 68416.m05897 expressed protein                             30   0.97 
At5g18830.2 68418.m02238 squamosa promoter-binding protein-like ...    28   3.9  
At4g27120.2 68417.m03898 expressed protein                             27   5.2  
At4g27120.1 68417.m03897 expressed protein                             27   5.2  
At1g59720.1 68414.m06720 pentatricopeptide (PPR) repeat-containi...    27   5.2  
At1g06460.1 68414.m00684 31.2 kDa small heat shock family protei...    27   5.2  
At5g03560.1 68418.m00314 expressed protein                             27   6.9  
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami...    27   6.9  
At1g14740.1 68414.m01762 expressed protein                             27   6.9  
At5g65770.1 68418.m08276 nuclear matrix constituent protein-rela...    27   9.1  

>At3g53440.2 68416.m05898 expressed protein
          Length = 512

 Score = 29.9 bits (64), Expect = 0.97
 Identities = 23/74 (31%), Positives = 33/74 (44%)
 Frame = -2

Query: 414 RKSXTDYSEPXHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHC 235
           RKS     +P  R+     L++RD++VK + D     +P    RR        RLV S  
Sbjct: 4   RKSTVVLPQPIRRSARLISLQNRDSQVKPRKDLGFGSEPTKKTRREVLRGLSKRLVYSSD 63

Query: 234 LEPPDSRGSTVSIS 193
               DSR   ++IS
Sbjct: 64  SPIEDSRSKKLNIS 77


>At3g53440.1 68416.m05897 expressed protein
          Length = 512

 Score = 29.9 bits (64), Expect = 0.97
 Identities = 23/74 (31%), Positives = 33/74 (44%)
 Frame = -2

Query: 414 RKSXTDYSEPXHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHC 235
           RKS     +P  R+     L++RD++VK + D     +P    RR        RLV S  
Sbjct: 4   RKSTVVLPQPIRRSARLISLQNRDSQVKPRKDLGFGSEPTKKTRREVLRGLSKRLVYSSD 63

Query: 234 LEPPDSRGSTVSIS 193
               DSR   ++IS
Sbjct: 64  SPIEDSRSKKLNIS 77


>At5g18830.2 68418.m02238 squamosa promoter-binding protein-like 7
           (SPL7) identical to squamosa promoter binding
           protein-like 7 [Arabidopsis thaliana] GI:5931635;
           contains Pfam profile PF03110: SBP domain
          Length = 775

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = +2

Query: 2   VRQVSFTLLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGL-CLNASKAEASL 178
           V+++    L+ C CD +      N      +H   ++   +K P AGL C    +A+ S 
Sbjct: 634 VKKMEPDSLVHCTCDCDVRLLHENMDLASDIHRKHQSPIESKDPEAGLDCKERIQADCSP 693

Query: 179 AESGKD 196
              GK+
Sbjct: 694 DSGGKE 699


>At4g27120.2 68417.m03898 expressed protein
          Length = 298

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = +2

Query: 101 LGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSK-QCDFTSRVSHSKRE 277
           + RA GG ++        AS + +++ E+G      +  E+GG++ +          +RE
Sbjct: 47  VARAGGGRRMRRRPAASGASSSTSNVQENGSGSEDEDEDEAGGTQARASKKKEKKRQERE 106

Query: 278 TRRRSPFGSRRS 313
            +R++   +R S
Sbjct: 107 AQRQAEEATRES 118


>At4g27120.1 68417.m03897 expressed protein
          Length = 298

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = +2

Query: 101 LGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSK-QCDFTSRVSHSKRE 277
           + RA GG ++        AS + +++ E+G      +  E+GG++ +          +RE
Sbjct: 47  VARAGGGRRMRRRPAASGASSSTSNVQENGSGSEDEDEDEAGGTQARASKKKEKKRQERE 106

Query: 278 TRRRSPFGSRRS 313
            +R++   +R S
Sbjct: 107 AQRQAEEATRES 118


>At1g59720.1 68414.m06720 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 638

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 19/49 (38%), Positives = 21/49 (42%)
 Frame = +2

Query: 53  TAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDM 199
           T  Y    S G LVH L      A  PSA    N  +   SLAE+  DM
Sbjct: 13  TITYYHPMSIGLLVHPLSPHIPPASSPSASTAGNHHQRIFSLAETCSDM 61


>At1g06460.1 68414.m00684 31.2 kDa small heat shock family protein /
           hsp20 family protein contains Pfam profile: PF00011
           Hsp20/alpha crystallin family
          Length = 285

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 162 RPKPA*PNPARICSLWSPESREALNNVTLLVAFRIQNAR-RDVEAHLD 302
           RPK   P  A + ++WSP S  A +  + +VA  +  A   D+   +D
Sbjct: 169 RPKLDLPKLANLGTVWSPRSNVAESTHSYVVAIELPGASINDIRVEVD 216


>At5g03560.1 68418.m00314 expressed protein
          Length = 241

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
 Frame = -2

Query: 441 LPSTTPRQERKSXTDYS---EPXHRTELYPDLRSRDARVKKKTDSIDL 307
           L +++ R+E+K+   +S   +  H  +L P+LR R   V+ +TD I++
Sbjct: 64  LTASSKRKEKKTTERFSAVIDAVHDRKLPPELRGRRDFVRSETDIINV 111


>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
           protein / RNA recognition motif (RRM)-containing protein
           similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
           {Escherichia coli O157:H7}; contains Pfam profiles
           PF01743: polyA polymerase family protein, PF00076: RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 881

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 336 HVHHGSEGPDITQFDVXARNSLXTTSVPGG 425
           HVH G++  +++ F   A+NSL  T    G
Sbjct: 142 HVHIGNDMIEVSSFSTSAQNSLRNTRTGSG 171


>At1g14740.1 68414.m01762 expressed protein
          Length = 733

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +2

Query: 119 GAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSK--QCDFTSRVSHSKRETRRRS 292
           G +L  + LC N+ K   SL + GK+++T     S   K  + DF +    +   ++R++
Sbjct: 67  GNELTLSYLCENSGKLAESLGQKGKEVVTFSENSSYDDKWVERDFFNLREMNPNSSKRKA 126


>At5g65770.1 68418.m08276 nuclear matrix constituent protein-related
           low similarity to nuclear matrix constituent protein 1
           (NMCP1) [Daucus carota] GI:2190187
          Length = 1042

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 21/74 (28%), Positives = 35/74 (47%)
 Frame = -2

Query: 420 QERKSXTDYSEPXHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKS 241
           +E K+  D S+  H  E    + S  A  KK+ +S+  +D    +  +S  E     +++
Sbjct: 95  EEIKASVDESDLTHMREKSAYV-SALAEAKKREESLK-KDVGIAKECISSLEKTLHEMRA 152

Query: 240 HCLEPPDSRGSTVS 199
            C E   S GST+S
Sbjct: 153 ECAETKVSAGSTMS 166


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,964,670
Number of Sequences: 28952
Number of extensions: 224377
Number of successful extensions: 607
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)