Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0296
         (349 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0453 + 5869627-5870232,5870383-5870897,5870964-5871600           30   0.57 
05_05_0200 - 23171803-23171906,23172304-23173951                       29   1.0  
08_02_0493 - 17770723-17770758,17770772-17770996,17771051-177720...    27   3.1  
01_05_0335 + 21074117-21074241,21074299-21074929,21075359-210753...    27   4.0  
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239...    26   7.1  
05_07_0098 + 27672298-27672561,27672617-27672705,27673111-276731...    26   7.1  

>04_01_0453 + 5869627-5870232,5870383-5870897,5870964-5871600
          Length = 585

 Score = 29.9 bits (64), Expect = 0.57
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 116 REAVIRYGLKGEAVVVTIIETLERISQGGWR 208
           R A+IR  +KG+  +  +I  LER+  GGWR
Sbjct: 345 RAALIRV-IKGKLTINEVIAELERLIPGGWR 374


>05_05_0200 - 23171803-23171906,23172304-23173951
          Length = 583

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 324 YRAPPRVFYFILLLKWVDK 268
           Y+ P R++YF+LL +W  K
Sbjct: 177 YQHPKRIYYFVLLCRWEQK 195


>08_02_0493 -
           17770723-17770758,17770772-17770996,17771051-17772033,
           17772196-17772720,17772801-17772990
          Length = 652

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 116 REAVIRYGLKGEAVVVTIIETLERISQGGWRIYVVD 223
           R A+I+   KG+  V  +I  LER+   GWR  V D
Sbjct: 260 RAALIKVS-KGQMTVNAVISELERLIPRGWRWVVHD 294


>01_05_0335 +
           21074117-21074241,21074299-21074929,21075359-21075399,
           21078458-21078560,21078755-21079601,21079938-21080689,
           21080712-21080970,21081011-21081354
          Length = 1033

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 143 KGEAVVVTIIETLERISQGGWRIYVVD 223
           +G+  V T++  LER+  G W+  V D
Sbjct: 612 RGQMTVQTVVSELERLIPGNWKWVVED 638


>06_02_0298 +
           13921310-13921834,13921923-13922063,13923601-13923951,
           13924071-13924130,13924261-13924380,13924569-13924718
          Length = 448

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = -1

Query: 328 WVPGPP-SSFLFYFIA*MGGQAHSP-PGIKWLLKPIDIYNVNAPP 200
           WVP PP S   F+    M G AH P  G   +  P+      APP
Sbjct: 321 WVPPPPPSDPAFWHHPYMRGPAHVPTQGTPCMAMPMPAARFPAPP 365


>05_07_0098 +
           27672298-27672561,27672617-27672705,27673111-27673159,
           27673217-27673304,27673891-27674020,27674790-27675366
          Length = 398

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +1

Query: 151 SSRCNYN*DLRTYISRWVAHLRCRCL 228
           S RC     LR    RW  HL+C CL
Sbjct: 299 SLRCTGTTVLRNKAPRWHEHLQCWCL 324


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,119,731
Number of Sequences: 37544
Number of extensions: 224663
Number of successful extensions: 392
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)