Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0296
         (349 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25797| Best HMM Match : Extensin_2 (HMM E-Value=0.55)               28   1.8  
SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.5  
SB_22302| Best HMM Match : Trefoil (HMM E-Value=0.00016)               26   7.3  
SB_19066| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.7  

>SB_25797| Best HMM Match : Extensin_2 (HMM E-Value=0.55)
          Length = 910

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 11/22 (50%), Positives = 18/22 (81%)
 Frame = +2

Query: 134 YGLKGEAVVVTIIETLERISQG 199
           +G+KG+A+ + + ETLERI +G
Sbjct: 2   FGIKGKALRIELEETLERILEG 23


>SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4085

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -1

Query: 271 QAHSPPGIKWLLKPIDIYNVNAPPTLR 191
           QAHSPP I++++   +   VN P TLR
Sbjct: 831 QAHSPPQIQFMISE-EGETVNLPKTLR 856


>SB_22302| Best HMM Match : Trefoil (HMM E-Value=0.00016)
          Length = 137

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 214 VNAPPTLRYTF*GLNYSYNDCFTLQTVTYYCFTAE 110
           VNAP  + Y F  LNY Y+    + T T Y  T +
Sbjct: 73  VNAPLDIPYCFYPLNYGYSLTSKVATKTGYKLTLQ 107


>SB_19066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 261

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -1

Query: 154 CFTLQTVTYYCFTAEIGRVMVPTRADSQEVLPPVITQII 38
           C TL  V   C T  +   +   RA    ++P  +TQ++
Sbjct: 7   CITLMAVMIRCITIMMNNAIKGDRAMFTHIVPVTLTQLL 45


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,307,221
Number of Sequences: 59808
Number of extensions: 242583
Number of successful extensions: 390
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)