Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0296
         (349 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   5.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   5.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   5.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   5.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    20   7.3  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    20   9.6  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    20   9.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   9.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   9.6  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 331 NWVPGPPSSFLFYF 290
           +WV  P SSF FY+
Sbjct: 78  HWVIHPCSSFRFYW 91


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 331 NWVPGPPSSFLFYF 290
           +WV  P SSF FY+
Sbjct: 78  HWVIHPCSSFRFYW 91


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 331 NWVPGPPSSFLFYF 290
           +WV  P SSF FY+
Sbjct: 78  HWVIHPCSSFRFYW 91


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 187 YISRWVAHLRCRCLWASVT 243
           ++  W  H +CR   ASVT
Sbjct: 426 FVEFWEHHFQCRYPNASVT 444


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 67  VLPPVITQIIILRV*FLPAARG 2
           +LP V+   + + V +LPA  G
Sbjct: 241 ILPTVLISFLCVLVFYLPAEAG 262


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 302 FILFYCLNGWTSSQPTWY 249
           F+LF  L   T  QPT++
Sbjct: 23  FVLFSFLRTRTKLQPTYF 40


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 302 FILFYCLNGWTSSQPTWY 249
           F+LF  L   T  QPT++
Sbjct: 23  FVLFSFLRTRTKLQPTYF 40


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 211 NAPPTLRYTF 182
           NAPP L Y+F
Sbjct: 419 NAPPMLLYSF 428


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 211 NAPPTLRYTF 182
           NAPP L Y+F
Sbjct: 419 NAPPMLLYSF 428


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,126
Number of Sequences: 438
Number of extensions: 2443
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)