Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0295
(696 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 30 0.28
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 30 0.36
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po... 30 0.36
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr... 28 1.1
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 27 1.9
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 26 5.9
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch... 25 7.8
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz... 25 7.8
SPAC1142.09 ||SPAC8C9.02|dubious|Schizosaccharomyces pombe|chr 1... 25 7.8
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 25 7.8
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1379
Score = 30.3 bits (65), Expect = 0.28
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +1
Query: 208 IKKTRNDAIKAAVASYLERRNYPDTEYYGNNNPNCQSAEQMAVSTIVQSEASRA 369
++K +NDA K AV S N P NPN + + A+ ++ +A A
Sbjct: 459 VEKLKNDASKCAVESQSLMINDPSVSSTSFYNPNMEKLKNGAIKQAIEHQALNA 512
>SPAC23D3.13c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1616
Score = 29.9 bits (64), Expect = 0.36
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Frame = +3
Query: 450 RNKNRETKK*ASGIVK-PFAMSSLSRDATWGT---PEVLHKCF*NDIQQHYHRKIYLSIN 617
R KN + KK A G +K + +LS+D+ E +K F + R IY+S+N
Sbjct: 19 RKKNADLKKLADGSLKFLYTNKNLSQDSLVSKLKGNEAFYKPFLFCCAKKIERHIYISLN 78
Query: 618 QLMGNLPSALYRPNSLKQLVNSL 686
+ + P+ L+ L NSL
Sbjct: 79 SIQLLAINDALSPDILESLFNSL 101
>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 467
Score = 29.9 bits (64), Expect = 0.36
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = -3
Query: 148 LFDFITYSFYLSTELNLYSLVDIIYYN-LPFYTANTYNL---NSW 26
+FD Y F+ T + ++D +Y N L Y TYN+ NSW
Sbjct: 149 VFDLKIYDFHSGTGIIALDILDYLYKNHLEVYGRTTYNIVLHNSW 193
>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 515
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/58 (24%), Positives = 24/58 (41%)
Frame = +1
Query: 280 TEYYGNNNPNCQSAEQMAVSTIVQSEASRANSILFSCINNDSSQYDIQYTRLVNFIKE 453
TEY N P E + V I S ++ +F+C S + + L+ ++E
Sbjct: 59 TEYLSNLKPQLSKQENIYVKHIKSSNEAKTELEIFNCYKEISISKEKKINSLLKLVRE 116
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/51 (29%), Positives = 21/51 (41%)
Frame = +1
Query: 217 TRNDAIKAAVASYLERRNYPDTEYYGNNNPNCQSAEQMAVSTIVQSEASRA 369
++N A AA Y + YP YY N PN A+ + A+ A
Sbjct: 91 SQNRAYGAAPQPYPPQGGYPQQPYYYPNQPNYYPAQPAYAQPVYAQPATSA 141
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 336 NCHLLSTLAIWVIVTVIFSIGIVSPF*IRS 247
N + + IW+ TV+ +IG S F I+S
Sbjct: 544 NTYASAFRVIWIFCTVVMAIGFASIFFIKS 573
>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +1
Query: 157 SQNIVLFY*KYSMIMSLIKKTRNDAIKAAVASYLERRNYPDTEYYGN 297
++ + ++Y S +++L K NDAI S ++ N D +Y N
Sbjct: 297 NRKVYMYYENGSQLLALDKDASNDAILVTSMSQID--NIYDNGFYNN 341
>SPBC1683.12 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 570 NDIQQHYHRKIYLSINQLMGNLPSAL 647
N++ HY R L NQ +GNL +
Sbjct: 388 NNMAPHYRRATALGCNQTIGNLAGVI 413
>SPAC1142.09 ||SPAC8C9.02|dubious|Schizosaccharomyces pombe|chr
1|||Manual
Length = 115
Score = 25.4 bits (53), Expect = 7.8
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Frame = -3
Query: 190 NTFNKIKQCFA------MSHLFDFITYSFYLSTELNLYSLVDIIYYNLPF 59
+TFNK K +S L DF +Y ++ N YS + I YY F
Sbjct: 39 STFNKTKTIIVVILSGKLSDLIDFKSYIEFVLKTNNSYSAILISYYRCIF 88
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1
Query: 208 IKKTRNDAIKAAVASYLERRNYPDTEYYGNNNPN--CQSAEQMAVSTI 345
+KK D ++ S E ++P TE+ G+ + C ++VST+
Sbjct: 401 VKKMNEDGADTSLLSVSEVTSHPPTEWTGSPLAHVLCSDVVNLSVSTV 448
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,854,937
Number of Sequences: 5004
Number of extensions: 56576
Number of successful extensions: 137
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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