Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0295
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1696 - 28779455-28779733,28779813-28780074,28780805-287809...    30   1.5  
04_03_1033 + 21861826-21863046,21863153-21863380,21863474-218637...    29   4.7  
02_02_0065 + 6490490-6491552,6491754-6493601,6493857-6494236           29   4.7  
11_01_0466 + 3607947-3610608,3610725-3611018,3611494-3611895,361...    28   6.2  
02_05_0029 - 25194827-25195095,25195129-25197970                       28   6.2  
02_01_0555 + 4086434-4087157,4087257-4087943,4088495-4089162           28   6.2  
08_01_0913 + 8995491-8995926,8995976-8997352,8997431-8998174,899...    28   8.1  
04_04_0599 - 26516854-26517452,26517547-26517963,26518044-265183...    28   8.1  

>07_03_1696 - 28779455-28779733,28779813-28780074,28780805-28780956,
            28781765-28781961,28782258-28782462,28782737-28782982,
            28783603-28783719,28784206-28784397,28784480-28784693,
            28784835-28784926,28784952-28785001,28785494-28785812,
            28785908-28786068,28786407-28786650,28787212-28787467,
            28787634-28787834,28788568-28788910,28789003-28789064,
            28789645-28789851,28790170-28790978
          Length = 1535

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +1

Query: 187  YSMIMSLIKKTRNDAIKAAV--ASYLERRNYPDTEYYGNNNPN 309
            Y   + L+KK+ ND++ A+V  A  L+RR Y   +++ N   N
Sbjct: 988  YEARLFLVKKSNNDSVIASVEEARDLQRRKYELNQFFRNTKTN 1030


>04_03_1033 +
           21861826-21863046,21863153-21863380,21863474-21863704,
           21863808-21864070,21864189-21864660
          Length = 804

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +1

Query: 271 YPDTEYYGNNNPNCQSAEQMAVSTIVQSEASRANSILFSCINNDSSQYDI-QYTRLVNFI 447
           + D   +G N+ N  SAE+      V+S   +A    F  +  DS + D   YT+L+N +
Sbjct: 323 HEDDVSFGGNSDNVSSAEK-EFQAKVKSTMEKA----FWDLVTDSMKGDKPDYTQLINLV 377

Query: 448 KEIR 459
           KE+R
Sbjct: 378 KEVR 381


>02_02_0065 + 6490490-6491552,6491754-6493601,6493857-6494236
          Length = 1096

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +3

Query: 588 YHRKIYLSINQLMGNLPSALYRPNSLKQL---VNSLQNG 695
           Y RK+ L +N L G +PS L R   L+ +    NSLQ G
Sbjct: 103 YLRKLDLPVNHLTGTIPSELGRLLDLQHVNLSYNSLQGG 141


>11_01_0466 + 3607947-3610608,3610725-3611018,3611494-3611895,
            3611984-3612217,3614113-3614138,3614446-3614633,
            3615707-3617670,3617938-3618423,3618527-3618894
          Length = 2207

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +3

Query: 600  IYLSINQLMGNLPSALYRPNSLKQLV 677
            ++LS NQ++G +P  ++ P S+ QL+
Sbjct: 1433 LHLSRNQIVGRIPKNVHLPPSISQLI 1458


>02_05_0029 - 25194827-25195095,25195129-25197970
          Length = 1036

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +3

Query: 597 KIYLSINQLMGNLPSALYRPNSLKQL 674
           ++Y+ +N + G+LP  L+R +SL+ L
Sbjct: 227 ELYVDLNSITGSLPDDLFRLSSLRDL 252


>02_01_0555 + 4086434-4087157,4087257-4087943,4088495-4089162
          Length = 692

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +3

Query: 594 RKIYLSINQLMGNLPSALYRPNSLK-QLVNSLQNG 695
           RK++LS N+L G +PS++  P  L+  L ++  NG
Sbjct: 170 RKLHLSSNELSGPIPSSITSPRLLELSLAHNQFNG 204


>08_01_0913 +
           8995491-8995926,8995976-8997352,8997431-8998174,
           8998402-8998748
          Length = 967

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 600 IYLSINQLMGNLPSALYRPNSLKQL 674
           IYLS NQ+ G +P  L++ N L  L
Sbjct: 361 IYLSENQITGTIPEDLWKLNKLTSL 385


>04_04_0599 -
           26516854-26517452,26517547-26517963,26518044-26518394,
           26518651-26518748,26518875-26518945,26519638-26520318
          Length = 738

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -3

Query: 661 LFGLYNAEGKFPINWLME 608
           LFG YN  GK PI W  E
Sbjct: 533 LFGKYNPGGKLPITWYPE 550


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,081,641
Number of Sequences: 37544
Number of extensions: 312822
Number of successful extensions: 843
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)