Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0295
         (696 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38341| Best HMM Match : TFIID_90kDa (HMM E-Value=4.6e-19)           43   3e-04
SB_24313| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_22188| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  

>SB_38341| Best HMM Match : TFIID_90kDa (HMM E-Value=4.6e-19)
          Length = 426

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
 Frame = +1

Query: 211 KKTRNDAIKAAVASYLERRNYPDTEYYGNNN--PNCQSAEQMAVSTIVQSEASRANSILF 384
           K  ++D + A + ++L++R Y D+E           Q  E +A+ T V +E    N +  
Sbjct: 6   KHLKSDTVPALLMNFLKKRKYADSEIAQTKEHASTQQKLEDVALRTAVNNECGIPNILSL 65

Query: 385 SCINNDSSQYDIQYTRLVNFIKEI 456
           S  + DSS +D Q+  L +FI ++
Sbjct: 66  SVNHLDSSTFDEQFGNLKSFILDV 89


>SB_24313| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 374

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +2

Query: 272 IPILNITVTITQIARVLSKWQFPLLYSLKQVVQILSCFHVSTMIPL 409
           +P+    + ++Q +++L K Q PL    ++ VQ LS  H S+  PL
Sbjct: 197 LPVSQAKIAVSQQSQLLPKQQLPLTPQQQRQVQHLSSKHSSSKQPL 242


>SB_22188| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1046

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/67 (25%), Positives = 33/67 (49%)
 Frame = +2

Query: 227 MQLKLRWLLI*KGETIPILNITVTITQIARVLSKWQFPLLYSLKQVVQILSCFHVSTMIP 406
           MQ+ +++LL+ K + +PIL+  V        L+   + L+Y+L     +    H   +IP
Sbjct: 541 MQVFVKFLLVEKSDGVPILDSLVARIGQESQLAVVSYGLIYTLLPSAPLALALHCLYLIP 600

Query: 407 LNTIYNT 427
              I ++
Sbjct: 601 CTHILSS 607


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,583,669
Number of Sequences: 59808
Number of extensions: 399050
Number of successful extensions: 804
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)