Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0295
         (696 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC041094-1|AAH41094.1|  325|Homo sapiens TAF5L protein protein.        54   4e-07
AL121990-8|CAI22016.1|  325|Homo sapiens TAF5-like RNA polymeras...    54   4e-07
AL121990-7|CAI22015.1|  589|Homo sapiens TAF5-like RNA polymeras...    54   4e-07
AF069736-1|AAC39906.1|  589|Homo sapiens PCAF associated factor ...    54   4e-07
AL121990-6|CAI22014.1|   84|Homo sapiens TAF5-like RNA polymeras...    30   9.1  

>BC041094-1|AAH41094.1|  325|Homo sapiens TAF5L protein protein.
          Length = 325

 Score = 54.4 bits (125), Expect = 4e-07
 Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
 Frame = +1

Query: 208 IKKTRNDAIKAAVASYLERRNYPDTEYYGNNNPNC-QSAEQMAVSTIVQSEASRANSILF 384
           +K+ R + I+ AV+ YL+RR Y D++          Q+AE+MA +  VQSE+  AN +  
Sbjct: 1   MKRVRTEQIQMAVSCYLKRRQYVDSDGPLKQGLRLSQTAEEMAANLTVQSESGCANIVSA 60

Query: 385 SCINNDSSQYDIQYTRLVNFIKE 453
           +    +  QY++Q+ RL NF+ +
Sbjct: 61  APCQAEPQQYEVQFGRLRNFLTD 83


>AL121990-8|CAI22016.1|  325|Homo sapiens TAF5-like RNA polymerase
           II, p300/CBP-associated factor (PCAF)-associated facto
           protein.
          Length = 325

 Score = 54.4 bits (125), Expect = 4e-07
 Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
 Frame = +1

Query: 208 IKKTRNDAIKAAVASYLERRNYPDTEYYGNNNPNC-QSAEQMAVSTIVQSEASRANSILF 384
           +K+ R + I+ AV+ YL+RR Y D++          Q+AE+MA +  VQSE+  AN +  
Sbjct: 1   MKRVRTEQIQMAVSCYLKRRQYVDSDGPLKQGLRLSQTAEEMAANLTVQSESGCANIVSA 60

Query: 385 SCINNDSSQYDIQYTRLVNFIKE 453
           +    +  QY++Q+ RL NF+ +
Sbjct: 61  APCQAEPQQYEVQFGRLRNFLTD 83


>AL121990-7|CAI22015.1|  589|Homo sapiens TAF5-like RNA polymerase
           II, p300/CBP-associated factor (PCAF)-associated facto
           protein.
          Length = 589

 Score = 54.4 bits (125), Expect = 4e-07
 Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
 Frame = +1

Query: 208 IKKTRNDAIKAAVASYLERRNYPDTEYYGNNNPNC-QSAEQMAVSTIVQSEASRANSILF 384
           +K+ R + I+ AV+ YL+RR Y D++          Q+AE+MA +  VQSE+  AN +  
Sbjct: 1   MKRVRTEQIQMAVSCYLKRRQYVDSDGPLKQGLRLSQTAEEMAANLTVQSESGCANIVSA 60

Query: 385 SCINNDSSQYDIQYTRLVNFIKE 453
           +    +  QY++Q+ RL NF+ +
Sbjct: 61  APCQAEPQQYEVQFGRLRNFLTD 83


>AF069736-1|AAC39906.1|  589|Homo sapiens PCAF associated factor 65
           beta protein.
          Length = 589

 Score = 54.4 bits (125), Expect = 4e-07
 Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
 Frame = +1

Query: 208 IKKTRNDAIKAAVASYLERRNYPDTEYYGNNNPNC-QSAEQMAVSTIVQSEASRANSILF 384
           +K+ R + I+ AV+ YL+RR Y D++          Q+AE+MA +  VQSE+  AN +  
Sbjct: 1   MKRVRTEQIQMAVSCYLKRRQYVDSDGPLKQGLRLSQTAEEMAANLTVQSESGCANIVSA 60

Query: 385 SCINNDSSQYDIQYTRLVNFIKE 453
           +    +  QY++Q+ RL NF+ +
Sbjct: 61  APCQAEPQQYEVQFGRLRNFLTD 83


>AL121990-6|CAI22014.1|   84|Homo sapiens TAF5-like RNA polymerase
           II, p300/CBP-associated factor (PCAF)-associated facto
           protein.
          Length = 84

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +1

Query: 208 IKKTRNDAIKAAVASYLERRNYPDTEYYGNNNPN-CQSAEQMAVS 339
           +K+ R + I+ AV+ YL+RR Y D++          Q+AE+MA +
Sbjct: 1   MKRVRTEQIQMAVSCYLKRRQYVDSDGPLKQGLRLSQTAEEMAAN 45


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,817,812
Number of Sequences: 237096
Number of extensions: 1881965
Number of successful extensions: 2763
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2759
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8007229802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)