Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0295
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.5  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/40 (22%), Positives = 20/40 (50%)
 Frame = -3

Query: 130 YSFYLSTELNLYSLVDIIYYNLPFYTANTYNLNSWICGVF 11
           Y  +    + L   + +   N+ F + +T+N++ W+  VF
Sbjct: 315 YLLFTMILVTLSIWITVCVLNVHFRSPSTHNMSPWVRQVF 354


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 124 FYLSTELNLYSLVDIIYYNL 65
           +Y+STE+    L D+  YNL
Sbjct: 298 WYMSTEIGSRDLCDVQRYNL 317


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 557 QVFLKRHSATLPQKDLSFHQPIDGE 631
           Q F+++HS  L Q+    HQ    E
Sbjct: 89  QSFMQQHSLYLQQQQQQHHQDSSSE 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,638
Number of Sequences: 438
Number of extensions: 3893
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)