Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0295
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g02990.2 68414.m00269 expressed protein similar to mature-par...    30   1.7  
At5g05340.1 68418.m00575 peroxidase, putative similar to peroxid...    29   2.9  
At1g74170.1 68414.m08590 leucine-rich repeat family protein cont...    29   3.9  
At3g60160.1 68416.m06717 ABC transporter family protein similar ...    28   5.1  
At2g27760.1 68415.m03364 tRNA isopentenyltransferase 2 / IPP tra...    27   9.0  

>At1g02990.2 68414.m00269 expressed protein similar to
            mature-parasite-infected erythrocyte surface antigen
            (GI:160409) {Plasmodium falciparum}
          Length = 1238

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +1

Query: 292  GNNNPNCQSAEQMAVSTIVQSEASRANSILFSCINNDSSQYDIQYTRLVNFIKE 453
            G N+ +  +AE+ A+S  V+S  S   + + S  NN S    + +++ VN+  E
Sbjct: 1129 GENSNHTLTAEKFALSNTVRSSPSVTGNHVISSGNNSSLSQLLAFSKNVNYAME 1182


>At5g05340.1 68418.m00575 peroxidase, putative similar to peroxidase
           [Nicotiana tabacum] gi|5381253|dbj|BAA82306; similar to
           Peroxidase P7 [Brassica rapa (Turnip)] SWISS-PROT:P00434
          Length = 324

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +1

Query: 280 TEYYGNNNPNCQSAEQMAVSTIVQSEASRANSIL 381
           T +Y  + PN  S  Q AV + V SEA    SIL
Sbjct: 32  TNFYSTSCPNLLSTVQTAVKSAVNSEARMGASIL 65


>At1g74170.1 68414.m08590 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
           pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 1068

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = +3

Query: 594 RKIYLSINQLMGNLPSALYRPNSLKQL 674
           R + LS NQL GN+PSAL    SL+ L
Sbjct: 353 RVLDLSSNQLTGNVPSALANLESLEYL 379


>At3g60160.1 68416.m06717 ABC transporter family protein similar to
           ATP-binding cassette transporter MRP8 GI:18031899 from
           [Arabidopsis thaliana]
          Length = 1490

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +3

Query: 156 IAKHCFILLKVFNDNVINKED 218
           +  HCFILL +F D+V+++ D
Sbjct: 93  LGTHCFILLLLFRDSVVSRCD 113


>At2g27760.1 68415.m03364 tRNA isopentenyltransferase 2 / IPP
           transferase 2 (IPT2) identical to tRNA
           isopentenyltransferase (IPT2) [Arabidopsis thaliana]
           GI:14279058; identical to cDNA tRNA isopentenyl
           transferase GI:12383201;
          Length = 466

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +3

Query: 570 NDIQQHYHRKI--YLSINQLMGNLPSALYR 653
           N I  + HRKI  YLS++   G LPS LY+
Sbjct: 180 NRIHPNNHRKINQYLSLHASRGVLPSKLYQ 209


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,413,805
Number of Sequences: 28952
Number of extensions: 275655
Number of successful extensions: 750
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)