Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0293
         (475 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000ECD46A Cluster: Tetratricopeptide repeat protein...    33   2.4  
UniRef50_Q4Z0C1 Cluster: Putative uncharacterized protein; n=3; ...    33   2.4  
UniRef50_A4VVU4 Cluster: Type IIA topoisomerase (DNA gyrase/topo...    33   4.3  
UniRef50_Q9HBQ9 Cluster: Putative uncharacterized protein; n=1; ...    33   4.3  
UniRef50_Q6BLZ0 Cluster: Similar to CA1985|IPF9591 Candida albic...    33   4.3  
UniRef50_Q88JJ4 Cluster: Putative uncharacterized protein; n=4; ...    32   7.4  
UniRef50_UPI0000EBC817 Cluster: PREDICTED: hypothetical protein;...    31   9.8  
UniRef50_A1SEL5 Cluster: FAD linked oxidase domain protein; n=1;...    31   9.8  
UniRef50_A2FA43 Cluster: Putative uncharacterized protein; n=1; ...    31   9.8  

>UniRef50_UPI0000ECD46A Cluster: Tetratricopeptide repeat protein 3
           (TPR repeat protein 3) (TPR repeat protein D) (RING
           finger protein 105).; n=2; Gallus gallus|Rep:
           Tetratricopeptide repeat protein 3 (TPR repeat protein
           3) (TPR repeat protein D) (RING finger protein 105). -
           Gallus gallus
          Length = 1876

 Score = 33.5 bits (73), Expect = 2.4
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = -2

Query: 309 NYGDQNRTSMSHEMRYAPDC-ACHTKCVIAGDAGLLRR---QSATKPR 178
           NY D+N      E+ + PDC    +K VI   +GL++R   Q  TKP+
Sbjct: 641 NYSDKNDKDFLQELCFTPDCRGLISKIVIFSSSGLVKREFEQKITKPK 688


>UniRef50_Q4Z0C1 Cluster: Putative uncharacterized protein; n=3;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium berghei
          Length = 275

 Score = 33.5 bits (73), Expect = 2.4
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = +2

Query: 434 RGGARYPIRPIVSR 475
           RGGARYPIRPIVSR
Sbjct: 260 RGGARYPIRPIVSR 273


>UniRef50_A4VVU4 Cluster: Type IIA topoisomerase (DNA gyrase/topo
           II, topoisomerase IV), A subunit; n=3; Streptococcus
           suis|Rep: Type IIA topoisomerase (DNA gyrase/topo II,
           topoisomerase IV), A subunit - Streptococcus suis
           (strain 05ZYH33)
          Length = 843

 Score = 32.7 bits (71), Expect = 4.3
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -2

Query: 396 VVRRSGHTHFFFWSLLL*NRFTYIGPGYENYGDQNRTS 283
           +V    H HFFF+S L   ++ Y+ P  ENY ++N +S
Sbjct: 97  IVNHGDHKHFFFYSDLKNTKWAYLIP--ENYQEKNHSS 132


>UniRef50_Q9HBQ9 Cluster: Putative uncharacterized protein; n=1;
           Homo sapiens|Rep: Putative uncharacterized protein -
           Homo sapiens (Human)
          Length = 353

 Score = 32.7 bits (71), Expect = 4.3
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = +1

Query: 415 KKKKKNSRGGPVPNS 459
           KKKKKNSRGGPVP +
Sbjct: 46  KKKKKNSRGGPVPGN 60


>UniRef50_Q6BLZ0 Cluster: Similar to CA1985|IPF9591 Candida albicans
           IPF9591; n=2; Saccharomycetaceae|Rep: Similar to
           CA1985|IPF9591 Candida albicans IPF9591 - Debaryomyces
           hansenii (Yeast) (Torulaspora hansenii)
          Length = 330

 Score = 32.7 bits (71), Expect = 4.3
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 388 THDWSLLDIKKKKKNSRGGPVPNSP 462
           +H WS LD KK   NS G P+ +SP
Sbjct: 238 SHKWSKLDTKKLVNNSNGQPIKSSP 262


>UniRef50_Q88JJ4 Cluster: Putative uncharacterized protein; n=4;
           Pseudomonas putida|Rep: Putative uncharacterized protein
           - Pseudomonas putida (strain KT2440)
          Length = 77

 Score = 31.9 bits (69), Expect = 7.4
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = -2

Query: 327 IGPGYENYGDQN--RTSMSHEMRYAPD--CACHTKCVIAGDAGL 208
           +G GY+ Y  Q+  R S++   R   +  CAC  +C  AGD GL
Sbjct: 30  LGEGYDLYDTQDKMRLSLNFSTRAQAEFECACRNRCGDAGDTGL 73


>UniRef50_UPI0000EBC817 Cluster: PREDICTED: hypothetical protein;
           n=1; Bos taurus|Rep: PREDICTED: hypothetical protein -
           Bos taurus
          Length = 73

 Score = 31.5 bits (68), Expect = 9.8
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +1

Query: 343 LKE*TPKKKVCVSAPTHDWSLLDIKKKKKNSRGGPVPNSPYSES 474
           L++ TPK+ + VS PT   +L   +  +  SR  P P SP++ +
Sbjct: 7   LRKVTPKRSLTVSGPTRSANLPPPRSPQSASRAPPRPPSPHASA 50


>UniRef50_A1SEL5 Cluster: FAD linked oxidase domain protein; n=1;
           Nocardioides sp. JS614|Rep: FAD linked oxidase domain
           protein - Nocardioides sp. (strain BAA-499 / JS614)
          Length = 906

 Score = 31.5 bits (68), Expect = 9.8
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 339 RFTYIGPGYENYGDQNRTSMSHEMRYAPDCACHTKCVIAGDAG 211
           R   + PG   + D  R +  + +R+ PD + HT+C I G  G
Sbjct: 104 RTAVVQPGVV-HADLQRAAAPYGLRFGPDPSTHTRCTIGGMIG 145


>UniRef50_A2FA43 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 416

 Score = 31.5 bits (68), Expect = 9.8
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 208 QPGVTCDNAFRVTCAIRRITHFV*HAST-ILVPIIFIPRAYICKSIL 345
           QPG+   N   V CAI  +  F  H    ++ P++FIP  Y  KSI+
Sbjct: 148 QPGIVIANYTHV-CAIGNVFSFYGHFFVDVVAPLMFIPEEYRNKSII 193


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 480,189,011
Number of Sequences: 1657284
Number of extensions: 9038637
Number of successful extensions: 19108
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 18704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19097
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 26450695845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)