Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0293
         (475 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0986 - 10009518-10009839,10009958-10011544,10012515-10013311     28   3.3  
08_02_0471 - 17563245-17563488,17563564-17563655,17563941-175640...    28   4.4  
03_06_0444 - 33979319-33980044                                         28   4.4  
11_01_0167 - 1360166-1360369,1360747-1360823,1360911-1361534,136...    27   5.8  
05_07_0344 + 29411767-29411961,29412692-29412741,29413295-294134...    27   7.7  

>12_01_0986 - 10009518-10009839,10009958-10011544,10012515-10013311
          Length = 901

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -3

Query: 308 IMGTKIV-LACHTKCVMRLIAHVTRNALSQVTPGCCAGSPPQSLVLIARFSHYCIFI 141
           ++G K++ L C++ C+ RL+ H           GCC G   + + L+    H  I++
Sbjct: 729 VIGEKLMDLLCYSPCLQRLVIH-----------GCCIGLLSKQMTLLVNLRHLEIWV 774


>08_02_0471 -
           17563245-17563488,17563564-17563655,17563941-17564023,
           17564418-17564499,17565234-17565461,17565553-17565654,
           17565818-17565953,17566080-17566129,17566465-17566572,
           17568702-17568911
          Length = 444

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +1

Query: 22  FTGYKKLNETIREIVLYYDNTIH 90
           F G K + E++++ +LYYDN ++
Sbjct: 130 FAGLKAVGESVQKPLLYYDNNVN 152


>03_06_0444 - 33979319-33980044
          Length = 241

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 24/85 (28%), Positives = 37/85 (43%)
 Frame = +1

Query: 187 CGGLPAQQPGVTCDNAFRVTCAIRRITHFV*HASTILVPIIFIPRAYICKSILKE*TPKK 366
           C  LP + P  T         A+R IT  +  A   L+P +       C   +KE     
Sbjct: 142 CYSLPPELPKPTISPP---EAAVRPITLPIGTAKPTLLPRVK-EEGESCGGRVKEEASSC 197

Query: 367 KVCVSAPTHDWSLLDIKKKKKNSRG 441
           +V V AP   W+++  K+KK++  G
Sbjct: 198 EVQVLAPEPMWTMISGKRKKRSGCG 222


>11_01_0167 -
           1360166-1360369,1360747-1360823,1360911-1361534,
           1361621-1361825
          Length = 369

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/54 (24%), Positives = 22/54 (40%)
 Frame = -3

Query: 353 YSFRIDLHI*ARGMKIMGTKIVLACHTKCVMRLIAHVTRNALSQVTPGCCAGSP 192
           Y+ R+   + A   ++ G  +V     K +M +I H  R    +    CC   P
Sbjct: 237 YNARVAARLAALRPRLAGADVVFCDIYKGIMDIITHPARYGFDETRKACCGLGP 290


>05_07_0344 +
           29411767-29411961,29412692-29412741,29413295-29413430,
           29413931-29414032,29414153-29414380,29414460-29414544,
           29414648-29414730,29414854-29414945,29415048-29415141
          Length = 354

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 22  FTGYKKLNETIREIVLYYDNTI 87
           F G K + E++++ +LYYDN +
Sbjct: 89  FAGLKAVGESVQKPLLYYDNNL 110


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,718,819
Number of Sequences: 37544
Number of extensions: 241810
Number of successful extensions: 506
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)