Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0293
         (475 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   2.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   2.9  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   5.1  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    21   5.1  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   5.1  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   6.7  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   6.7  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 94  CSVSCCRNIELFLVLFRLIFYI 29
           C +SC  NI   ++L   +FY+
Sbjct: 105 CVLSCWTNIYYIIILAWALFYL 126



 Score = 22.2 bits (45), Expect = 2.9
 Identities = 7/25 (28%), Positives = 18/25 (72%)
 Frame = -1

Query: 103 LIICSVSCCRNIELFLVLFRLIFYI 29
           LI+C+V+ C ++   +V+F ++ ++
Sbjct: 316 LIVCTVNSCTSMLSGIVIFSVVGFM 340


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 94  CSVSCCRNIELFLVLFRLIFYI 29
           C +SC  NI   ++L   +FY+
Sbjct: 158 CVLSCWTNIYYIIILAWALFYL 179



 Score = 22.2 bits (45), Expect = 2.9
 Identities = 7/25 (28%), Positives = 18/25 (72%)
 Frame = -1

Query: 103 LIICSVSCCRNIELFLVLFRLIFYI 29
           LI+C+V+ C ++   +V+F ++ ++
Sbjct: 369 LIVCTVNSCTSMLSGIVIFSVVGFM 393


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = -3

Query: 314 MKIMGTKIVLACHTKCVMRLIAHVTRNALSQV 219
           M + G      CH +C+ RL   +   A  +V
Sbjct: 470 MAVSGLPEPCRCHARCIARLALDMMDLAADEV 501


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -3

Query: 287 LACHTKCVMRLI 252
           L C+T C+M+L+
Sbjct: 65  LQCYTTCIMKLL 76


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = -3

Query: 314 MKIMGTKIVLACHTKCVMRLIAHVTRNALSQV 219
           M + G      CH +C+ RL   +   A  +V
Sbjct: 470 MAVSGLPEPCRCHARCIARLALDMMDLAADEV 501


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -1

Query: 145 SYIC*SFVLCLVNLLIICSVSCCR 74
           S++    +LC  ++L +C++S  R
Sbjct: 113 SWVSLDILLCTASILSLCAISIDR 136


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 370 VCVSAPTHDWSLLDIKKKKKNSRGGPVPNSPYSES 474
           V V+  T +W L + K  K +S     P+S  + S
Sbjct: 67  VTVAISTGEWLLTEEKLPKTSSNASVEPDSKVTYS 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,117
Number of Sequences: 438
Number of extensions: 2774
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)