Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0293
         (475 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g37450.1 68418.m04507 leucine-rich repeat transmembrane prote...    28   3.7  
At4g10370.1 68417.m01702 DC1 domain-containing protein contains ...    28   3.7  
At2g42150.1 68415.m05217 DNA-binding bromodomain-containing prot...    27   4.9  
At5g06040.1 68418.m00669 self-incompatibility protein-related          27   8.6  
At5g06030.1 68418.m00668 self-incompatibility protein-related si...    27   8.6  

>At5g37450.1 68418.m04507 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 935

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 387 RSGHTHFFFWSLLL*NRFTYIGPGYE 310
           + G+TH F+ SL +   F Y+ P YE
Sbjct: 498 KDGNTHIFYSSLCIKRVFIYVTPVYE 523


>At4g10370.1 68417.m01702 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 687

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 217 VTCDNAFRVTCAIRRITHFV*HASTILVPIIFIP 318
           +TC+ +    CA+R++  F+ H  +   P+ F P
Sbjct: 201 LTCNLSMHPVCAMRKVPFFIDHPKSHPHPLTFFP 234


>At2g42150.1 68415.m05217 DNA-binding bromodomain-containing protein
           contains Pfam domains, PF00439: Bromodomain and PF00249:
           Myb-like DNA-binding domain
          Length = 631

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +1

Query: 334 KSILKE*TPKKKVCVSAPTHDWSLLDIKKKKKNSRGG-PVPNSP 462
           +S +K+   ++++    P  +   LD+++KK+ S  G PVPN P
Sbjct: 114 QSKVKQLEEEREMSFIKPDTETENLDLERKKERSDSGEPVPNPP 157


>At5g06040.1 68418.m00669 self-incompatibility protein-related 
          Length = 111

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = -1

Query: 163 SLIIVFSYIC*SFVLCLVNLLIICSVS 83
           S+I + SY+C  F++ +V + +ICS++
Sbjct: 5   SIINLNSYVCSIFIMSIVVISLICSLA 31


>At5g06030.1 68418.m00668 self-incompatibility protein-related
           simlar to self-incompatibility [Papaver rhoeas]
           GI:3097260
          Length = 150

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -1

Query: 163 SLIIVFSYIC*SFVLCLVNLLIICS 89
           S I ++SY+C  F++ +V + +ICS
Sbjct: 5   SKINLYSYVCSIFIMSIVVISLICS 29


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,327,414
Number of Sequences: 28952
Number of extensions: 200190
Number of successful extensions: 453
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)