Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0292
         (530 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-...   122   4e-27
UniRef50_Q4W4D1 Cluster: Reverse transcriptase-like; n=1; Anther...    54   3e-06
UniRef50_Q28RA2 Cluster: ComEC/Rec2-related protein; n=2; Rhodob...    36   0.58 
UniRef50_UPI0000519CB3 Cluster: PREDICTED: similar to CG5859-PA;...    35   1.3  
UniRef50_UPI00005A9609 Cluster: PREDICTED: similar to USP6 N-ter...    34   1.8  
UniRef50_Q4Z0C1 Cluster: Putative uncharacterized protein; n=3; ...    33   3.1  
UniRef50_Q640I9 Cluster: JmjC domain-containing histone demethyl...    33   5.4  
UniRef50_UPI00005A604F Cluster: PREDICTED: similar to USP6 N-ter...    32   9.5  
UniRef50_Q3W7F4 Cluster: Similar to Uncharacterized conserved pr...    32   9.5  
UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    32   9.5  

>UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=9; cellular organisms|Rep: Endonuclease and
            reverse transcriptase-like protein - Bombyx mori (Silk
            moth)
          Length = 960

 Score =  122 bits (295), Expect = 4e-27
 Identities = 55/57 (96%), Positives = 55/57 (96%)
 Frame = +1

Query: 1    RYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPSDPITFALDAFSSNT 171
            RYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPSDPIT ALD FSSNT
Sbjct: 882  RYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPSDPITLALDTFSSNT 938


>UniRef50_Q4W4D1 Cluster: Reverse transcriptase-like; n=1; Antheraea
           mylitta|Rep: Reverse transcriptase-like - Antheraea
           mylitta (Tasar silkworm)
          Length = 186

 Score = 53.6 bits (123), Expect = 3e-06
 Identities = 25/52 (48%), Positives = 33/52 (63%)
 Frame = +1

Query: 4   YFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPSDPITFALDAF 159
           YF+KA  H + L+V+AA+Y P P+   A  RRRPRH+  DP D IT   D +
Sbjct: 94  YFEKAANHPSPLVVSAANYQPVPN--AARPRRRPRHIFIDPPDEITAVNDQY 143


>UniRef50_Q28RA2 Cluster: ComEC/Rec2-related protein; n=2;
           Rhodobacteraceae|Rep: ComEC/Rec2-related protein -
           Jannaschia sp. (strain CCS1)
          Length = 706

 Score = 35.9 bits (79), Expect = 0.58
 Identities = 18/39 (46%), Positives = 22/39 (56%)
 Frame = -1

Query: 446 PEGLSSFTRTGGRAKAQPRGVGFANNCPSASEGDLTTQE 330
           P GL   T   GRA ++PRG GF       ++GDL TQE
Sbjct: 540 PGGLVGLTTDQGRALSRPRGDGFVAGIWLENDGDLITQE 578


>UniRef50_UPI0000519CB3 Cluster: PREDICTED: similar to CG5859-PA;
           n=1; Apis mellifera|Rep: PREDICTED: similar to CG5859-PA
           - Apis mellifera
          Length = 986

 Score = 34.7 bits (76), Expect = 1.3
 Identities = 15/40 (37%), Positives = 26/40 (65%)
 Frame = -2

Query: 406 QRLSQEGWDLLTTARAPPKET*QLKSNCFANESTTGSESR 287
           ++ S+E WD++ TA  P ++  Q +SN   + ++TGS SR
Sbjct: 697 RKFSREAWDMVLTAFGPSRDQPQKRSNSGNSGTSTGSASR 736


>UniRef50_UPI00005A9609 Cluster: PREDICTED: similar to USP6
           N-terminal like protein (Related to the N terminus of
           tre) (RN-tre), partial; n=1; Canis lupus familiaris|Rep:
           PREDICTED: similar to USP6 N-terminal like protein
           (Related to the N terminus of tre) (RN-tre), partial -
           Canis familiaris
          Length = 386

 Score = 34.3 bits (75), Expect = 1.8
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -2

Query: 331 SNCFANESTTGSESRPAEKIRRETQRADAWVRL 233
           S C  ++   G   R A+K+R+ET RAD W+++
Sbjct: 27  SPCAGDKELPGPSPREAKKLRQETWRADKWIKM 59


>UniRef50_Q4Z0C1 Cluster: Putative uncharacterized protein; n=3;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium berghei
          Length = 275

 Score = 33.5 bits (73), Expect = 3.1
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = +3

Query: 489 RGGARYPIRPIVSR 530
           RGGARYPIRPIVSR
Sbjct: 260 RGGARYPIRPIVSR 273


>UniRef50_Q640I9 Cluster: JmjC domain-containing histone
           demethylation protein 1B; n=5; Xenopus|Rep: JmjC
           domain-containing histone demethylation protein 1B -
           Xenopus laevis (African clawed frog)
          Length = 1259

 Score = 32.7 bits (71), Expect = 5.4
 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = -2

Query: 406 QRLSQEGWDLLTTARAPPKET*QLKSNC-FANESTTGSESRPAEKIRRE 263
           +R+ QE  D LT A    KE+ Q +S+   A  ST GSE +  +KIRR+
Sbjct: 812 RRIKQEPDDDLTEAAPKAKESDQSRSSSPTAGPSTEGSEPKEKKKIRRK 860


>UniRef50_UPI00005A604F Cluster: PREDICTED: similar to USP6
           N-terminal like; n=1; Canis lupus familiaris|Rep:
           PREDICTED: similar to USP6 N-terminal like - Canis
           familiaris
          Length = 752

 Score = 31.9 bits (69), Expect = 9.5
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -2

Query: 322 FANESTTGSESRPAEKIRRETQRADAWVRL 233
           + ++   G   R A+K+R+ET RAD W+++
Sbjct: 9   YRDKELPGPSPREAKKLRQETPRADKWIKM 38


>UniRef50_Q3W7F4 Cluster: Similar to Uncharacterized conserved
           protein; n=4; Frankineae|Rep: Similar to Uncharacterized
           conserved protein - Frankia sp. EAN1pec
          Length = 645

 Score = 31.9 bits (69), Expect = 9.5
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 155 PSALILGAGLGTPVTVLVELDKEVDVQPNPCISPLS 262
           PSA + GAG G+ V ++ E++K  D  P     P S
Sbjct: 605 PSAFVSGAGAGSDVDIMAEIEKLDDTAPGEDTPPAS 640


>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 31.9 bits (69), Expect = 9.5
 Identities = 23/71 (32%), Positives = 28/71 (39%)
 Frame = +1

Query: 70  PDHAGASHRRRPRHVLTDPSDPITFALDAFSSNTXXXXXXXXXXXXXXXXXXXXXX*PMH 249
           P       RR P HVL+DP D ++  LD  S+                         P  
Sbjct: 26  PRDGATKSRRHPNHVLSDPRDSLSVLLDLSSTGYCPCRVRRATN-------------PKT 72

Query: 250 QPAEFLAGSSQ 282
           QP +FLAGSSQ
Sbjct: 73  QPMKFLAGSSQ 83


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 492,579,972
Number of Sequences: 1657284
Number of extensions: 9265814
Number of successful extensions: 24025
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 23345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24019
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 33873797511
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)