Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0292
         (530 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0050 + 18665251-18665613,18667280-18667744,18668548-186690...    31   0.58 
01_06_0265 - 28011181-28011240,28011298-28011375,28011493-280118...    28   5.4  
02_03_0076 - 14861337-14861974,14862008-14862119,14862150-14863580     27   7.1  
09_02_0139 - 4875234-4876210,4877532-4877932,4878056-4878135           27   9.4  
03_02_0214 - 6486899-6487213,6487306-6487579,6487944-6489937           27   9.4  
01_05_0412 + 21929446-21929713,21931402-21931501,21931755-21931827     27   9.4  

>11_05_0050 +
           18665251-18665613,18667280-18667744,18668548-18669037,
           18669115-18669143
          Length = 448

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 52  ADYSPNPDHAGASHRRRPRHVLTDPSDPITF 144
           AD  PNP  A  SH +   HV + P  P+ F
Sbjct: 132 ADICPNPQPAYMSHPKPNPHVFSSPCSPVVF 162


>01_06_0265 -
           28011181-28011240,28011298-28011375,28011493-28011802,
           28012913-28013533,28013733-28013818
          Length = 384

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 46  AAADYSPNPDHAGASHRRRPRHVLTDPSD 132
           +AA +SP  DHA A H     H  +D SD
Sbjct: 101 SAAAWSPARDHAHAHHNHHHHHHPSDSSD 129


>02_03_0076 - 14861337-14861974,14862008-14862119,14862150-14863580
          Length = 726

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +3

Query: 300 PVVDSFAKQLLLSC*VSFGGARAVVSKSHPSWLSLCSPTCPGET 431
           P    F   +LL     F  A  VV ++H SW  L SP+  G +
Sbjct: 671 PFSSPFMTLVLLKRKAMFDHAPPVVKRAHSSWALLSSPSDDGHS 714


>09_02_0139 - 4875234-4876210,4877532-4877932,4878056-4878135
          Length = 485

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 298 SESRPAEKIRRETQRADAWVRLHVD 224
           SES+P E  RR   R+ AW R+  D
Sbjct: 92  SESQPLETARRGALRSHAWARVGSD 116


>03_02_0214 - 6486899-6487213,6487306-6487579,6487944-6489937
          Length = 860

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +1

Query: 37  LIVAAADYSPNPDHAGASHRRRPRHVLT 120
           L   AAD +P P   GA  RR PR V T
Sbjct: 12  LATGAADQAPAPAALGALRRRLPRVVTT 39


>01_05_0412 + 21929446-21929713,21931402-21931501,21931755-21931827
          Length = 146

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 337 VVRSPSEALGQLLANPTPLG*AFARPPVLVKLE 435
           + R+ S  LG+LLA+P+PL      P +L +++
Sbjct: 7   LARAGSSLLGRLLASPSPLRAGLPPPSLLSRIQ 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,040,635
Number of Sequences: 37544
Number of extensions: 281067
Number of successful extensions: 663
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)