Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0292
         (530 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g17280.1 68414.m02105 ubiquitin-conjugating enzyme, putative ...    31   0.48 
At2g02310.1 68415.m00169 F-box family protein / SKP1 interacting...    28   4.5  
At3g59020.1 68416.m06578 importin beta-2 subunit family protein ...    27   6.0  
At3g52600.1 68416.m05794 beta-fructosidase, putative / beta-fruc...    27   6.0  

>At1g17280.1 68414.m02105 ubiquitin-conjugating enzyme, putative
           similar to ubiquitin conjugating enzyme 6 from [Homo
           sapiens] GI:14029267, [Mus musculus] GI:14029263;
           contains Pfam profile PF00179: Ubiquitin-conjugating
           enzyme
          Length = 237

 Score = 31.1 bits (67), Expect = 0.48
 Identities = 18/70 (25%), Positives = 33/70 (47%)
 Frame = -2

Query: 442 KAFPVSPGQVGEQRLSQEGWDLLTTARAPPKET*QLKSNCFANESTTGSESRPAEKIRRE 263
           K FP    +  +Q+L+++    LTT  +P K   +++S    + +   SE    E+ +  
Sbjct: 151 KLFPEYVEKYNQQQLAEQATTQLTTPESPQKSDTKVESEKTIDPTKGDSEGGLKERKKNN 210

Query: 262 TQRADAWVRL 233
            Q   AW+ L
Sbjct: 211 KQGLPAWIIL 220


>At2g02310.1 68415.m00169 F-box family protein / SKP1 interacting
           partner 3-related contains similarity to SKP1
           interacting partner 3 GI:10716951 from [Arabidopsis
           thaliana]
          Length = 307

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -2

Query: 325 CFANESTTGSESRPAEKIRRETQRADAWVRLHVDLFVEFDEYGYRG 188
           CF +EST  ++  P +K+ +  +R D W+   +  F  F++ G  G
Sbjct: 232 CF-DESTDKTKEWPKKKLMKSKKRGDGWMEAEIGDF--FNDGGLMG 274


>At3g59020.1 68416.m06578 importin beta-2 subunit family protein
           similar to D-Importin 7/RanBP7 [Drosophila melanogaster]
           GI:7542336; contains Pfam profile PF03810: Importin-beta
           N-terminal domain
          Length = 1112

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 37  LIVAAADYSPNPDHAGASHRRRPRH 111
           LIV AA +SPNPD   A+ +   +H
Sbjct: 8   LIVGAAAFSPNPDERRAAEQSLNQH 32


>At3g52600.1 68416.m05794 beta-fructosidase, putative /
           beta-fructofuranosidase, putative similar to
           beta-fructofuranosidase [Daucus carota] GI:18324
          Length = 590

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 61  SPNPDHAGASHRRRPRHVLTDPSDPITF 144
           S +P H  A H + PRH + DP+ P+ +
Sbjct: 42  SVSPLHRTAYHFQPPRHWINDPNAPMLY 69


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,433,101
Number of Sequences: 28952
Number of extensions: 194380
Number of successful extensions: 467
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)