Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0291
(670 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0099 - 41076056-41076059,41076135-41076175,41076937-410770... 38 0.007
03_05_0402 - 23851755-23851802,23852012-23852022,23853055-23853427 31 0.63
01_06_1796 - 39932487-39932633,39933150-39933201,39933370-399334... 31 1.1
11_06_0610 - 25449085-25453284 30 1.9
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 29 2.5
04_04_0779 - 28023735-28024058,28024520-28024618,28024704-280249... 29 4.4
12_01_0874 + 8384332-8384657,8385447-8386044 28 5.9
09_03_0058 + 11950668-11950701,11951068-11951106,11951586-119519... 28 5.9
07_01_0767 + 5896982-5897572,5897664-5897861 28 5.9
01_05_0011 + 17133501-17133738,17135335-17135607,17145224-171453... 28 7.7
>01_07_0099 -
41076056-41076059,41076135-41076175,41076937-41077041,
41077476-41077552,41078773-41078944,41079099-41079194,
41080268-41080465
Length = 230
Score = 37.9 bits (84), Expect = 0.007
Identities = 26/71 (36%), Positives = 33/71 (46%)
Frame = -3
Query: 266 ALDGALARVDVVRAGPRGSIVVLKSLRGLPRPVQAAREPAVATTQTSAFVAELVILETME 87
AL AL+R D GP + L++L LPR AA PA A Q A + L + +
Sbjct: 11 ALALALSRADAAAPGPAAGVQWLRTLSSLPRDPAAAASPAPAPRQ-PAVGSPLGLSKIPG 69
Query: 86 YEDDQPLEGVQ 54
YE L G Q
Sbjct: 70 YEQTSRLSGTQ 80
>03_05_0402 - 23851755-23851802,23852012-23852022,23853055-23853427
Length = 143
Score = 31.5 bits (68), Expect = 0.63
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 5 SLPKPADSGHGLCVYHPELPPRVGHLHIP 91
+LP+PA + H +C Y + P H+ IP
Sbjct: 27 TLPQPAPTSHEVCPYRCQSPSAANHIRIP 55
>01_06_1796 -
39932487-39932633,39933150-39933201,39933370-39933495,
39933645-39933743,39934039-39934258,39934599-39934764,
39935108-39935161,39935527-39935657,39935747-39935818,
39936524-39936602,39936705-39936783,39936868-39936902,
39936986-39937111
Length = 461
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 288 PPDDELDPRDVTSYNIHPETRWNV 359
P DDELDP D +SY+ P W V
Sbjct: 375 PEDDELDPMDPSSYSDAPRGGWVV 398
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +3
Query: 285 APPDDELDPRDVTSYNIHPETRWNVRPTAPIYVPNDDARSIRVPTPQNIP 434
+PP E P + P ++ P AP+ +P +S+ P P ++P
Sbjct: 1240 SPPPPEKSPPPAAPVILSPPAVKSLPPPAPVSLPPPPVKSLPPPAPVSLP 1289
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 472 IATGRWKYRTIIKI*GRVRHLAFRTKWRPRLARTNG 579
+A G++++ TIIKI R W PRL + NG
Sbjct: 341 LALGKYQFFTIIKIEDVFTGTLVRHPWLPRLVKENG 376
>04_04_0779 -
28023735-28024058,28024520-28024618,28024704-28024940,
28025227-28025334,28025427-28025486,28025813-28025888,
28025984-28026144,28026374-28026436,28026543-28026630,
28026872-28027612,28027695-28028239
Length = 833
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 303 LDPRDVTSYNIHPETRWNVRPTAPIYVPNDDARSIRVPTP 422
L P ++ + HP N PT+PI VP R+ P+P
Sbjct: 369 LPPLSISHSSFHPN---NSTPTSPISVPRSPGRTENPPSP 405
>12_01_0874 + 8384332-8384657,8385447-8386044
Length = 307
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = -3
Query: 611 LPYTGTGIAARPFVRANRGRHFVRKARWRTRPQILIIVRYFHRPVAM 471
L G G +R GRH R +RWR RP I+R +PV +
Sbjct: 142 LAAAGCGSGGERLLRDEDGRHGGRASRWR-RPIFFPILRRRPQPVVV 187
>09_03_0058 + 11950668-11950701,11951068-11951106,11951586-11951982,
11952016-11952314,11953743-11956795
Length = 1273
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = -3
Query: 119 VAELVILETMEYE--DDQPLEGVQDGKRISHDH 27
V +L +L+ M Y DD+P G+Q+ K ++H H
Sbjct: 945 VGKLTLLQNMPYYAVDDKPGRGIQELKNMNHLH 977
>07_01_0767 + 5896982-5897572,5897664-5897861
Length = 262
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 285 APPDDELDPRDVTSY-NIHPETRWNVRPTAPIYVPNDDARSIR 410
A PDD D +V ++ +IHPE P P+ P+ DA S R
Sbjct: 18 AEPDDVADDVEVEAFRDIHPEPSPPHLPPPPLRQPSWDAASHR 60
>01_05_0011 +
17133501-17133738,17135335-17135607,17145224-17145348,
17145463-17145612,17145653-17145696,17145822-17146174,
17146280-17146602,17147010-17147105
Length = 533
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 603 HWHRHCCPPIRSRQSRPPF 547
H R C P +++RQ RPPF
Sbjct: 475 HTLRFCSPQLQARQCRPPF 493
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,465,400
Number of Sequences: 37544
Number of extensions: 490539
Number of successful extensions: 1595
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1593
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -