Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0291
         (670 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1011| Best HMM Match : 7tm_2 (HMM E-Value=2e-40)                    50   2e-06
SB_35287| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   3e-05
SB_14117| Best HMM Match : 7tm_2 (HMM E-Value=2.4e-25)                 46   4e-05
SB_42286| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   6e-05
SB_54225| Best HMM Match : 7tm_2 (HMM E-Value=1.9e-22)                 41   8e-04
SB_855| Best HMM Match : 7tm_2 (HMM E-Value=5.4e-12)                   36   0.030
SB_20459| Best HMM Match : 7tm_2 (HMM E-Value=0.00021)                 35   0.069
SB_56285| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.069
SB_4665| Best HMM Match : 7tm_2 (HMM E-Value=2.5e-11)                  32   0.37 
SB_32583| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_25018| Best HMM Match : Drf_FH1 (HMM E-Value=9)                     30   1.5  
SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13)                   30   2.0  
SB_57573| Best HMM Match : 7tm_2 (HMM E-Value=3.7e-40)                 30   2.0  
SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11)                    29   3.4  
SB_50641| Best HMM Match : Rad21_Rec8_N (HMM E-Value=0)                29   4.5  
SB_23606| Best HMM Match : VirB (HMM E-Value=1.3)                      29   4.5  
SB_34262| Best HMM Match : efhand (HMM E-Value=6.3e-26)                28   7.9  
SB_10745| Best HMM Match : 7tm_1 (HMM E-Value=2.2e-31)                 28   7.9  

>SB_1011| Best HMM Match : 7tm_2 (HMM E-Value=2e-40)
          Length = 406

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 25/52 (48%), Positives = 35/52 (67%)
 Frame = +3

Query: 3   LLYLNQQTVVMAYAFTILNSLQGLVIFIFHCLQNDKFRNECARLSRRHRWLS 158
           LL  + +TV   Y F ILNSLQGL+IFIFHC+ N + ++    + RR++ LS
Sbjct: 342 LLAFSAETVAFKYIFAILNSLQGLMIFIFHCVLNKQIQD---AVKRRYQQLS 390


>SB_35287| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 374

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 22/49 (44%), Positives = 28/49 (57%)
 Frame = +3

Query: 3   LLYLNQQTVVMAYAFTILNSLQGLVIFIFHCLQNDKFRNECARLSRRHR 149
           LL     T+V  Y F + NSLQG  +FIFHC  N+K  +E  R S + R
Sbjct: 273 LLTFGTDTLVFKYLFAVCNSLQGFAVFIFHCAFNNKV-HEAMRFSSQRR 320


>SB_14117| Best HMM Match : 7tm_2 (HMM E-Value=2.4e-25)
          Length = 294

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 22/50 (44%), Positives = 32/50 (64%)
 Frame = +3

Query: 3   LLYLNQQTVVMAYAFTILNSLQGLVIFIFHCLQNDKFRNECARLSRRHRW 152
           +L +    +V  Y FTILNSLQGL+IF+ H L++ + R+   R  RR +W
Sbjct: 171 VLAVTDAGLVFQYLFTILNSLQGLLIFVLHVLRSSEIRHAFER--RRRQW 218


>SB_42286| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1820

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 20/34 (58%), Positives = 23/34 (67%)
 Frame = +3

Query: 21   QTVVMAYAFTILNSLQGLVIFIFHCLQNDKFRNE 122
            Q V   Y F I NSLQGL IFIFHCL+  + RN+
Sbjct: 1676 QRVTFEYLFCIFNSLQGLFIFIFHCLRIKEVRNQ 1709


>SB_54225| Best HMM Match : 7tm_2 (HMM E-Value=1.9e-22)
          Length = 431

 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 19/30 (63%), Positives = 21/30 (70%)
 Frame = +3

Query: 27  VVMAYAFTILNSLQGLVIFIFHCLQNDKFR 116
           VV  Y FTILNS QGL+IFI HC  N + R
Sbjct: 343 VVTMYLFTILNSTQGLLIFILHCALNLEMR 372


>SB_855| Best HMM Match : 7tm_2 (HMM E-Value=5.4e-12)
          Length = 701

 Score = 35.9 bits (79), Expect = 0.030
 Identities = 17/31 (54%), Positives = 19/31 (61%)
 Frame = +3

Query: 24  TVVMAYAFTILNSLQGLVIFIFHCLQNDKFR 116
           T+VM Y FTI  S QG +IFI H L    FR
Sbjct: 531 TLVMQYLFTITCSFQGFMIFILHGLMKKDFR 561


>SB_20459| Best HMM Match : 7tm_2 (HMM E-Value=0.00021)
          Length = 397

 Score = 34.7 bits (76), Expect = 0.069
 Identities = 14/27 (51%), Positives = 23/27 (85%)
 Frame = +3

Query: 3   LLYLNQQTVVMAYAFTILNSLQGLVIF 83
           + ++N++T+VMAY F+ILN+LQ +V F
Sbjct: 111 VFFVNEETLVMAYLFSILNALQLIVRF 137


>SB_56285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1127

 Score = 34.7 bits (76), Expect = 0.069
 Identities = 14/27 (51%), Positives = 23/27 (85%)
 Frame = +3

Query: 3   LLYLNQQTVVMAYAFTILNSLQGLVIF 83
           + ++N++T+VMAY F+ILN+LQ +V F
Sbjct: 848 VFFVNEETLVMAYLFSILNALQLIVRF 874


>SB_4665| Best HMM Match : 7tm_2 (HMM E-Value=2.5e-11)
          Length = 213

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +3

Query: 3   LLYLNQQTVVMAYAFTILNSLQ 68
           + Y+N +T+ MAY FTI NSLQ
Sbjct: 150 VFYVNSETLFMAYFFTIFNSLQ 171


>SB_32583| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 526

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +3

Query: 18  QQTVVMAYAFTILNSLQGLVIFIFHCL 98
           Q T  + YAF ILNSLQG +I + + L
Sbjct: 131 QATSFLWYAFVILNSLQGFLILLSYVL 157


>SB_25018| Best HMM Match : Drf_FH1 (HMM E-Value=9)
          Length = 189

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 26/61 (42%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = -3

Query: 329 VARHISGVQFVVRRRGLVVPP-ALDGALARVDVVRAGPRGSIVVLKSLRGLPRPVQAARE 153
           V + +SG   VV+  GL  PP  + G     DVV+ G RG   VL+ LRG P  VQ  R 
Sbjct: 86  VVQGLSGPPDVVQ--GLRGPPDVVQGLRGPPDVVQ-GLRGPPDVLQGLRGPPDVVQGLRG 142

Query: 152 P 150
           P
Sbjct: 143 P 143



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -3

Query: 287 RGLVVPP-ALDGALARVDVVRAGPRGSIVVLKSLRGLPRPVQAAREP 150
           +GL  PP  L G     DVV+ G RG   V++ LRG P  VQ  R P
Sbjct: 118 QGLRGPPDVLQGLRGPPDVVQ-GLRGPPDVVQGLRGPPDVVQGLRGP 163


>SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13)
          Length = 1287

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +3

Query: 39  YAFTILNSLQGLVIFIFHCLQNDKFR 116
           +A TI+    GL+IF+FHC +N K R
Sbjct: 540 FAITII--FLGLIIFLFHCYKNPKAR 563


>SB_57573| Best HMM Match : 7tm_2 (HMM E-Value=3.7e-40)
          Length = 956

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 3   LLYLNQQTVVMAYAFTILNSLQ 68
           +L +N QT+V  Y F +LNSLQ
Sbjct: 673 VLCVNSQTIVFQYIFAVLNSLQ 694


>SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11)
          Length = 1771

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +3

Query: 3   LLYLNQQTVVMAYAFTILNSLQ 68
           L ++N+ ++VMAY F I N+LQ
Sbjct: 602 LFFVNKDSLVMAYLFNIFNALQ 623


>SB_50641| Best HMM Match : Rad21_Rec8_N (HMM E-Value=0)
          Length = 816

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -3

Query: 167 QAAREPAVATTQTSAFVAELVILET-MEYEDDQPLEGVQDGKRISHDHCLLV*VEK 3
           +A +EP     +T+    EL I++  ME    +P+E VQ GKR      L+V  EK
Sbjct: 516 EALQEPVPEINETANTTNELTIVQNEMEGFVLEPVEVVQKGKRSRRKRKLIVDEEK 571


>SB_23606| Best HMM Match : VirB (HMM E-Value=1.3)
          Length = 205

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -3

Query: 287 RGLVVPP-ALDGALARVDVVRAGPRGSIVVLKSLRGLPRPVQAAREP 150
           +GL  PP  + G     DVV+ G RG   V++ LRG P  VQ  R P
Sbjct: 91  QGLTGPPDVVQGLRGPPDVVQ-GLRGPPDVVQGLRGPPDVVQGLRGP 136



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -3

Query: 287 RGLVVPP-ALDGALARVDVVRAGPRGSIVVLKSLRGLPRPVQAAREP 150
           +GL  PP  + G     DVV+ G RG   V++ LRG P  VQ  R P
Sbjct: 81  QGLRGPPDVVQGLTGPPDVVQ-GLRGPPDVVQGLRGPPDVVQGLRGP 126



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = -3

Query: 329 VARHISGVQFVVRRRGLVVPP-ALDGALARVDVVRAGPRGSIVVLKSLRGLPRPVQAARE 153
           V + ++G   VV+  GL  PP  + G     DVV+ G RG   V++ LRG P  VQ  R 
Sbjct: 89  VVQGLTGPPDVVQ--GLRGPPDVVQGLRGPPDVVQ-GLRGPPDVVQGLRGPPDVVQGLRG 145

Query: 152 P 150
           P
Sbjct: 146 P 146


>SB_34262| Best HMM Match : efhand (HMM E-Value=6.3e-26)
          Length = 354

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 255 SVKSRRYHQAAPPDDELDPRDVTSYNIHP-ETRWNVRPT 368
           +V+ +   Q  PPD E +P D T+    P ET+ N R T
Sbjct: 30  AVREQPTPQELPPDHETEPEDSTNAQREPSETKANDRAT 68


>SB_10745| Best HMM Match : 7tm_1 (HMM E-Value=2.2e-31)
          Length = 354

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +3

Query: 36  AYAFTILNSLQGLVIFIFHCLQNDKFRNECARLSRRHRWLSCC 164
           A+A+ IL    GL+    + L N+KFRNE   L      L CC
Sbjct: 259 AFAYAILY-FNGLINVCIYVLMNEKFRNEVKTL------LKCC 294


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,780,563
Number of Sequences: 59808
Number of extensions: 533904
Number of successful extensions: 1649
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1648
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)