Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0291
         (670 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19240.1 68415.m02246 RabGAP/TBC domain-containing protein lo...    33   0.23 
At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein ...    29   2.8  
At5g64630.3 68418.m08123 transducin family protein / WD-40 repea...    29   3.7  
At5g64630.2 68418.m08122 transducin family protein / WD-40 repea...    29   3.7  
At5g64630.1 68418.m08121 transducin family protein / WD-40 repea...    29   3.7  
At3g24180.1 68416.m03035 expressed protein contains Pfam domain ...    29   3.7  
At2g41020.1 68415.m05067 WW domain-containing protein contains P...    29   3.7  
At5g04670.1 68418.m00475 expressed protein BRL protein, Homo sap...    28   4.9  
At2g15580.1 68415.m01784 zinc finger (C3HC4-type RING finger) fa...    28   6.5  
At3g26350.1 68416.m03287 expressed protein  ; expression support...    25   9.7  

>At2g19240.1 68415.m02246 RabGAP/TBC domain-containing protein low
           similarity to SP|Q08484 GTPase-activating protein GYP1
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF00566: TBC domain
          Length = 840

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -3

Query: 323 RHISGVQFVVRRRGLVVPPALDGALARVDVVRAGPRGSIVVLKSLRGL 180
           +HI  ++ V ++   +VP  L G LA+ +++  G   +   LK LR L
Sbjct: 786 KHIEAIELVFQQEPCLVPAGLIGNLAKTNLIEKGQVTATTALKELRKL 833


>At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein /
            transcription factor jumonji (jmj) family protein
            contains Pfam domians PF02375: jmjN domain, PF02373: jmjC
            domain and PF00096: Zinc finger, C2H2 type
          Length = 1327

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
 Frame = -2

Query: 612  SSIHWHRHCCPPIRSRQSRPPFCSKSKMANATSDFDNRSV------FPSPCSYA*TRCYV 451
            SSI + R  C  +RSR  R   C  S     TSD + + +       P  CS +  +   
Sbjct: 1150 SSIGFIRSPCEGLRSRGKRKATCETSLKHTETSDEEKKPIAKRLKKTPKACSGSRQQEVP 1209

Query: 450  SATHCGGCFAE 418
            + TH   C+ E
Sbjct: 1210 TTTHPNRCYLE 1220


>At5g64630.3 68418.m08123 transducin family protein / WD-40 repeat
           family protein Similar to (SP:Q13112) Chromatin assembly
           factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
           sapiens]
          Length = 428

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -3

Query: 530 WRTRPQILIIVRYFHRPVAMHRRDAM*VRRTVGDV-LRSGHTDRSCVVVWHV 378
           W+  P         H+ ++ HR+D + ++ +  D  L SG  D SC ++W V
Sbjct: 32  WKLHPSETNQSWKVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSC-IIWDV 82


>At5g64630.2 68418.m08122 transducin family protein / WD-40 repeat
           family protein Similar to (SP:Q13112) Chromatin assembly
           factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
           sapiens]
          Length = 487

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -3

Query: 530 WRTRPQILIIVRYFHRPVAMHRRDAM*VRRTVGDV-LRSGHTDRSCVVVWHV 378
           W+  P         H+ ++ HR+D + ++ +  D  L SG  D SC ++W V
Sbjct: 91  WKLHPSETNQSWKVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSC-IIWDV 141


>At5g64630.1 68418.m08121 transducin family protein / WD-40 repeat
           family protein Similar to (SP:Q13112) Chromatin assembly
           factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
           sapiens]
          Length = 397

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -3

Query: 530 WRTRPQILIIVRYFHRPVAMHRRDAM*VRRTVGDV-LRSGHTDRSCVVVWHV 378
           W+  P         H+ ++ HR+D + ++ +  D  L SG  D SC ++W V
Sbjct: 91  WKLHPSETNQSWKVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSC-IIWDV 141


>At3g24180.1 68416.m03035 expressed protein contains Pfam domain
           PF04685: Protein of unknown function, DUF608
          Length = 950

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = +3

Query: 249 QGSVKSRRYHQAAPPDDEL-DP-RDVTSYNIHPETRW-NVRPTAPIYVPNDDA 398
           +G+V  R+   A P D  + DP  ++ +YNIH  +RW ++ P   + V  D A
Sbjct: 593 EGNVGIRKVRGAVPHDLGMHDPWNEMNAYNIHDTSRWKDLNPKFVLQVYRDFA 645


>At2g41020.1 68415.m05067 WW domain-containing protein contains Pfam
           domain PF00397: WW domain
          Length = 463

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 279 QAAPPDDELDPRDVTSYNIHPETRWNV 359
           +A   DDELDP D +SY+  P   W V
Sbjct: 371 RAHAEDDELDPMDPSSYSDAPRGGWVV 397


>At5g04670.1 68418.m00475 expressed protein BRL protein, Homo
           sapiens, EMBL:AF005067
          Length = 766

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 358 YARPRRYTCQTTTQDRSVCPLRKTSPTVRRTHIASRL 468
           Y+R R+  C+ ++ DRS  PLR      RR  ++ R+
Sbjct: 119 YSRKRKRLCEPSSSDRSEEPLRSLKFYRRRRKLSQRV 155


>At2g15580.1 68415.m01784 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 196

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +3

Query: 261 KSRRYHQAAPPDDELDPRDVTSYNIHPETRWNVRPTAPIYVPNDDARSIRV 413
           + RR+H  APP +  +   V +   H    W  RP+  +Y  N ++    V
Sbjct: 12  RRRRFHGGAPPIESSNTASVAAAAGHV---WTRRPSFSLYTTNHESHQAHV 59


>At3g26350.1 68416.m03287 expressed protein  ; expression supported
           by MPSS
          Length = 356

 Score = 25.0 bits (52), Expect(2) = 9.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 50  HPELPPRVGHLHIPLSPE*QVPQRMRSSESSPP 148
           +P   P+   + +PLSPE ++P R   + S  P
Sbjct: 75  NPIQEPKHSVIPVPLSPEERLPPRKTQNSSKRP 107



 Score = 20.6 bits (41), Expect(2) = 9.7
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = +2

Query: 8   LPKPADSGHGLCVYHPELPPRV 73
           +P P  S H     HP  PP +
Sbjct: 43  IPHPKKSHHKTTQPHPVAPPGI 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,134,655
Number of Sequences: 28952
Number of extensions: 347332
Number of successful extensions: 1005
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)