Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0290
         (605 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0UA19 Cluster: ATP/GTP-binding site motif A; n=10; Bur...    36   0.74 
UniRef50_A5K5H8 Cluster: Putative uncharacterized protein; n=1; ...    33   5.2  
UniRef50_Q7PDT5 Cluster: ERYTHROCYTE MEMBRANE PROTEIN PFEMP3; n=...    33   6.9  

>UniRef50_A0UA19 Cluster: ATP/GTP-binding site motif A; n=10;
           Burkholderia|Rep: ATP/GTP-binding site motif A -
           Burkholderia cenocepacia MC0-3
          Length = 383

 Score = 35.9 bits (79), Expect = 0.74
 Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
 Frame = -1

Query: 302 PQPDTVRDTLAYIPDRSRYNDLFRTLNPLKARNTSDASDSAVGYSDATTTLTSLPEIRNL 123
           PQ D V DT++ +PD +   +L R+  PL A       D AV           L E    
Sbjct: 10  PQTDRVADTMSVLPDDASVTELMRSFAPLLA-------DEAVTELVINRPQRILTETHRG 62

Query: 122 WHAHKLNK--YQRIKGIFCFFFSIFNLETNEEYP 27
           W AH L +  ++R+        ++ N   + E+P
Sbjct: 63  WQAHDLPELDFERLMAFAVAIATLTNQSVSTEHP 96


>UniRef50_A5K5H8 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium vivax|Rep: Putative uncharacterized protein -
           Plasmodium vivax
          Length = 932

 Score = 33.1 bits (72), Expect = 5.2
 Identities = 20/47 (42%), Positives = 26/47 (55%)
 Frame = -1

Query: 239 LFRTLNPLKARNTSDASDSAVGYSDATTTLTSLPEIRNLWHAHKLNK 99
           +FR +NP K  N  DA DSA G S   + + S P+  NL    K+NK
Sbjct: 164 IFRFVNPRK--NEGDAGDSARGPSCYNSHVVSSPQNYNLSEIKKMNK 208


>UniRef50_Q7PDT5 Cluster: ERYTHROCYTE MEMBRANE PROTEIN PFEMP3; n=3;
           Plasmodium (Vinckeia)|Rep: ERYTHROCYTE MEMBRANE PROTEIN
           PFEMP3 - Plasmodium yoelii yoelii
          Length = 792

 Score = 32.7 bits (71), Expect = 6.9
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = -2

Query: 400 VKENTSKLPSNQECY*NGSVLNY*NSRKVHRTLHNLTQCVTR*HTYRTDRDITTCFEL*I 221
           +K N S++P N+ C  N S  N  N    H+T   + +     +TY+        F++ I
Sbjct: 207 MKNNGSEIPKNEMCLNNNSFTNIQNHHFDHKTNRLIRENYFHDNTYKKSEQNNNNFDVSI 266

Query: 220 RLKPE 206
            +K E
Sbjct: 267 NMKRE 271


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 521,657,716
Number of Sequences: 1657284
Number of extensions: 9083110
Number of successful extensions: 21447
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21444
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43147568152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)