Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0290
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    29   0.53 
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c...    28   0.92 
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    27   1.6  
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c...    26   4.9  
SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po...    25   6.5  

>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = -1

Query: 317 SSPDTPQPDTVRDTLAYIPDRSRYNDLFRTLNPLKARNTSDASDSAVGYSDATTTLTS 144
           S  +T  P  V  T++Y    S   D   T N   + ++   S S   YSD TTT+TS
Sbjct: 661 SLKETSSPAYVSSTVSYT---SSSVDSSSTYNSTGSSSSDSQSFSGTTYSDPTTTITS 715


>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 488

 Score = 28.3 bits (60), Expect = 0.92
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 257 RSRYNDLFRTLNPLKARNTSDASDSAVGYSDATTTLTSLPEIR 129
           RSR   +FR ++P+K      A DS    S  T+  + L  +R
Sbjct: 443 RSRLKQIFRLIDPVKTMQFQQAEDSIRSKSTVTSATSLLNWVR 485


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +1

Query: 139 GNDVKVVVASLYPTALSDASEVFRALSGFKVRNRSLYRDRSGMYANVS 282
           GN +   VA    +++ D ++VFR+L GFK       RD S     +S
Sbjct: 97  GNIISASVAPQRISSVIDYADVFRSLPGFKNIENGGNRDTSSRIEELS 144


>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 303

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = +1

Query: 178 TALSDASEVFRALSGFKVRNRSLYRDRSGMYA---NVSRTVSGCGVSGELFWSFNSLIRI 348
           T +   + V R++SG  V +        G+Y+    +S  + G G S  +++S     + 
Sbjct: 45  TRMQMLNGVSRSVSGNIVNSVIKISSTEGVYSLWRGISSVIMGAGPSHAIYFSVLEFFKS 104

Query: 349 HFNSTPD 369
             N++PD
Sbjct: 105 KINASPD 111


>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 399

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = -1

Query: 188 DSAVGYSDATTTLTSLPEIRNLWHAHKLNKYQRIKGIFCFFFS-IFNLETNEEYPSK 21
           D A+   D         E+RN+ +++   +Y+R K    F  S +++ +   EY  K
Sbjct: 232 DEALSAEDCNRLAEEYLELRNMQYSNSAKEYRRSKSNHLFGGSAMYHAQLGREYHEK 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,251,606
Number of Sequences: 5004
Number of extensions: 41921
Number of successful extensions: 105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)