BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ceN-0290 (605 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_12745| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3 SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05) 29 2.9 SB_11857| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7 SB_35019| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45) 28 6.7 >SB_12745| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 501 Score = 30.3 bits (65), Expect = 1.3 Identities = 17/55 (30%), Positives = 24/55 (43%) Frame = -2 Query: 433 FLKKTIIFDSLVKENTSKLPSNQECY*NGSVLNY*NSRKVHRTLHNLTQCVTR*H 269 F KT + + VK + + +EC G V R +HR H L C+ R H Sbjct: 448 FRSKTALINHQVKHLDERPFTGREC---GQVFKRFKDRNIHRCTHTLGGCIQRQH 499 >SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05) Length = 1023 Score = 29.1 bits (62), Expect = 2.9 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 5/64 (7%) Frame = -1 Query: 299 QPDTVRDTLA-YIPDRSRYN----DLFRTLNPLKARNTSDASDSAVGYSDATTTLTSLPE 135 QP R+ L +PDR Y+ D+FRT + +K S + D +TSL + Sbjct: 222 QPKDAREQLTTQLPDRVNYDAYDADIFRTTSNVKPLTDSILRQGSHSMPDVIPKVTSLTD 281 Query: 134 IRNL 123 I L Sbjct: 282 IERL 285 >SB_11857| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 70 Score = 27.9 bits (59), Expect = 6.7 Identities = 9/19 (47%), Positives = 14/19 (73%) Frame = -1 Query: 470 IEVNEVKKPDKYLFKKNDY 414 +EVN++ +PD Y+ NDY Sbjct: 30 VEVNQIWRPDTYINNNNDY 48 >SB_35019| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45) Length = 412 Score = 27.9 bits (59), Expect = 6.7 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = -2 Query: 487 FSVMTILKLMRSRNPTNIFLKKTIIFDSLV 398 F V TI K+ R + PTN+ +FD +V Sbjct: 56 FVVRTIFKVPRMKTPTNMMFVNMALFDIIV 85 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,427,494 Number of Sequences: 59808 Number of extensions: 304673 Number of successful extensions: 635 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 610 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 635 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1475788250 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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