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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0290
         (605 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12745| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)                 29   2.9  
SB_11857| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_35019| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)              28   6.7  

>SB_12745| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 501

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = -2

Query: 433 FLKKTIIFDSLVKENTSKLPSNQECY*NGSVLNY*NSRKVHRTLHNLTQCVTR*H 269
           F  KT + +  VK    +  + +EC   G V      R +HR  H L  C+ R H
Sbjct: 448 FRSKTALINHQVKHLDERPFTGREC---GQVFKRFKDRNIHRCTHTLGGCIQRQH 499


>SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)
          Length = 1023

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
 Frame = -1

Query: 299 QPDTVRDTLA-YIPDRSRYN----DLFRTLNPLKARNTSDASDSAVGYSDATTTLTSLPE 135
           QP   R+ L   +PDR  Y+    D+FRT + +K    S     +    D    +TSL +
Sbjct: 222 QPKDAREQLTTQLPDRVNYDAYDADIFRTTSNVKPLTDSILRQGSHSMPDVIPKVTSLTD 281

Query: 134 IRNL 123
           I  L
Sbjct: 282 IERL 285


>SB_11857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 470 IEVNEVKKPDKYLFKKNDY 414
           +EVN++ +PD Y+   NDY
Sbjct: 30  VEVNQIWRPDTYINNNNDY 48


>SB_35019| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)
          Length = 412

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 487 FSVMTILKLMRSRNPTNIFLKKTIIFDSLV 398
           F V TI K+ R + PTN+      +FD +V
Sbjct: 56  FVVRTIFKVPRMKTPTNMMFVNMALFDIIV 85


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,427,494
Number of Sequences: 59808
Number of extensions: 304673
Number of successful extensions: 635
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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