Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0289
         (483 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy...    29   0.37 
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    26   3.4  
SPBC428.13c |mob1||protein kinase regulator Mob1|Schizosaccharom...    25   6.0  
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom...    25   6.0  

>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
           N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 543

 Score = 29.1 bits (62), Expect = 0.37
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +1

Query: 121 LTFSRNKHNNKDLDDYIYINITFNA 195
           ++FS+NK NN+DLD  ++ N+   A
Sbjct: 511 ISFSKNKKNNRDLDISVHWNVNGKA 535


>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 110 ILIKWFSFFRPRYAKRFETRR 48
           IL K+F++ RP + K+  TRR
Sbjct: 296 ILEKYFTYLRPSWLKKLGTRR 316


>SPBC428.13c |mob1||protein kinase regulator
           Mob1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 226 LY*HGLYCSSI*VMVALTHQCYLN 297
           +Y H +YCS   VMVA+  + YLN
Sbjct: 156 IYAH-IYCSHFHVMVAMELESYLN 178


>SPCC663.10 |||methyltransferase, DUF1613 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 502

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = -2

Query: 362 YIALKDKYAKQI 327
           Y+ LKDKYAKQ+
Sbjct: 228 YVILKDKYAKQL 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,696,921
Number of Sequences: 5004
Number of extensions: 29816
Number of successful extensions: 57
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)