Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0289
         (483 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97550-5|AAK18982.2|  497|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical pr...    28   4.1  
AF100307-8|AAC68937.2|  250|Caenorhabditis elegans Hypothetical ...    27   5.4  
Z50857-2|CAA90718.1|  219|Caenorhabditis elegans Hypothetical pr...    27   7.1  
Z75543-4|CAA99871.1|  383|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>U97550-5|AAK18982.2|  497|Caenorhabditis elegans Hypothetical
           protein T20F7.7 protein.
          Length = 497

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = -3

Query: 148 CCVCFLRMLVVPRY*LNGFLFSDLDTQKDSKHVGILDFH 32
           CC+   R  +   Y L  FLF  L  Q   K +  L FH
Sbjct: 173 CCLLTHRNFLAATYSLKKFLFDQLLAQSSMKTLAFLPFH 211


>U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical
           protein F10E7.5 protein.
          Length = 220

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -2

Query: 482 TCVHHSWKDNLNRKIH*YKRSLKLKINLKIYFIDNIRRC*YIALKDKY 339
           T V    KD  N  ++  + S+    NL I+ I N+R   +IA++ KY
Sbjct: 13  TKVKKKTKDTKNNLVNEVRASVDQYKNLFIFTIANMRSTRFIAIRQKY 60


>AF100307-8|AAC68937.2|  250|Caenorhabditis elegans Hypothetical
           protein T12B5.13 protein.
          Length = 250

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 270 NHDLNARTIKSMLIQKCGKALL*YDSV 190
           N +L AR I S+ + KC K L  YDS+
Sbjct: 134 NSELTARNITSLDLWKCAKKLHLYDSL 160


>Z50857-2|CAA90718.1|  219|Caenorhabditis elegans Hypothetical
           protein F11A1.2 protein.
          Length = 219

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = -3

Query: 169 CNHLDLYCCVCFLRMLVVPRY*LNGFLFSDLDTQKDSKHVGILDFHKQFLMLK 11
           CN L+   CVC    L       N F FS +  + D++H   L  H  F+  K
Sbjct: 42  CNILNRRVCVCLKPTLSFAARVQNEFCFSHIFRRDDAEHTHTL--HSTFIKRK 92


>Z75543-4|CAA99871.1|  383|Caenorhabditis elegans Hypothetical
           protein K01D12.4 protein.
          Length = 383

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +1

Query: 277 THQCYLNCLSVIYIGLLICLAYLSFSAMY*QRLILSMKYIFRFIFSFRER 426
           T + +L     I  G++ C   + F  ++ +RL+  M YI R   S RER
Sbjct: 143 TPRTHLGRFITIVYGVVGCTCCVLFFNLFLERLVTGMSYILR---SLRER 189


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,104,956
Number of Sequences: 27780
Number of extensions: 159826
Number of successful extensions: 350
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)