Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0288
         (440 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    24   0.74 
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    24   0.74 
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    24   0.74 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   6.9  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    20   9.1  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    20   9.1  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          20   9.1  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.8 bits (49), Expect = 0.74
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 27  TRPSGRWCEAPSAGLC 74
           ++ S + CE PSAGLC
Sbjct: 97  SKKSCQGCEMPSAGLC 112


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
          ortholog protein.
          Length = 471

 Score = 23.8 bits (49), Expect = 0.74
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 27 TRPSGRWCEAPSAGLC 74
          ++ S + CE PSAGLC
Sbjct: 45 SKKSCQGCEMPSAGLC 60


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 23.8 bits (49), Expect = 0.74
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 27  TRPSGRWCEAPSAGLC 74
           ++ S + CE PSAGLC
Sbjct: 228 SKKSCQGCEMPSAGLC 243


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 158 LEPPDSRGSTVSISLPDSARLVR 90
           LEP  S    VS++ P+   LVR
Sbjct: 492 LEPLYSGNLAVSVATPNDTSLVR 514


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 199 ETRRRTHLDRGDRCYRFFS 255
           +T++ TH+ +GD+   F S
Sbjct: 317 DTQKNTHMYKGDQWVAFDS 335


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 302 MSGLGIVCRRLPFLAGCCAR*SSVVLRSVET 394
           + G+ IV   L    G C R    +LR+ +T
Sbjct: 407 LGGIAIVDLSLDDFKGTCGRDKYDILRTAKT 437


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +1

Query: 100 LAESGKDMLTVEPRESGGSKQCDFTS 177
           L +S  D     PR  GG+K   F++
Sbjct: 97  LKDSSSDSEDERPRPGGGTKYQTFSN 122


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,402
Number of Sequences: 336
Number of extensions: 2173
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9880622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)