Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0288
         (440 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    29   0.24 
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    25   3.9  
SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar...    25   3.9  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    25   5.2  
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    25   6.8  
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    24   9.0  
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb...    24   9.0  
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub...    24   9.0  

>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 29.5 bits (63), Expect = 0.24
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -1

Query: 239 HRSPRSKWVRRRVSRFECETRLVKSHCLEPPD-SRGSTVSISLPDSA 102
           H  P  +W +RR  R   E+    SH +  P+ S  ST S  +  S+
Sbjct: 112 HIGPNGEWAKRRKPRTTVESNASSSHLVSKPESSHPSTGSFEVKSSS 158


>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 324 VDDFRSWRGVVLGRAASCCDLLRLS 398
           VD FR W  +      SC DLL+LS
Sbjct: 72  VDGFRLWITMEYCDGGSCLDLLKLS 96


>SPCC1223.02 |nmt1|thi3|no message in thiamine
           Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 187 HSKRETRRRTHLDRGDRCYRFFS 255
           H KRE     H ++ +RC+ +FS
Sbjct: 243 HFKREMGSELHREQFERCFAYFS 265


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
 Frame = -2

Query: 412 SPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR-SRDARVKKKTDSI 236
           S  +  S   SQH   L    P  E+KS  D S PR +   +      R  R  K  D+ 
Sbjct: 134 SSSSSSSSQSSQHSTHLQFQIPSNEKKSLDDPS-PRRKPSFFSKSNLKRKYRYLKNPDAW 192

Query: 235 DLRDPNGFDXASRVLNAK 182
           +L  P       + LN K
Sbjct: 193 NL--PPSLQFIPKNLNRK 208


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -2

Query: 394 SLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 233
           +++  + D  L  TT    +  STDY   + +TE   +L S      K+T SI+
Sbjct: 349 NVDDEEDDDFLDVTTATSLQNKSTDYGSVKRKTE---NLNSDSDIQNKRTKSIE 399


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 406 GAGLSLNRSQHDAALPSTTPRQERKSS 326
           G  LS+  S+ DAALP+  P  E + S
Sbjct: 427 GRPLSIADSECDAALPTVVPELEIEGS 453


>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -3

Query: 330 RLQTIPSPDIELSYIRTFGAVMHVLRKKPIASISAIQMGSTXRLAF 193
           RL T+   +    Y+     V   L+KKP+A +     G T  L F
Sbjct: 132 RLVTLYYLNYLTKYLELMDTVFLFLKKKPLAFLHCYHHGITALLCF 177


>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
           subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -3

Query: 348 PARNGSRLQTIPSPDIELSYIRTFGAVMHVLRKKPIAS 235
           P+ NG R++   SP  E+++     AVM  +RK+ + +
Sbjct: 186 PSENG-RIRVSMSPQNEINFTPENPAVMEKIRKRGVCN 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,858,505
Number of Sequences: 5004
Number of extensions: 36370
Number of successful extensions: 106
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)