Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0288
(440 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 33 0.13
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 31 0.31
01_01_0870 - 6789903-6792251 29 2.2
01_06_0695 - 31292622-31293317 28 2.9
08_02_0104 + 12404890-12405129,12405244-12405333,12405953-124060... 28 3.8
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 28 3.8
10_08_0113 - 14896341-14897153 27 6.7
07_01_1214 - 11583510-11583653,11585063-11585148,11585234-115853... 27 6.7
06_03_1200 - 28352647-28352712,28353097-28353216,28353314-283534... 27 6.7
01_06_0723 + 31501900-31502808,31502846-31503295 27 6.7
09_06_0342 + 22410674-22411060,22412219-22412299,22412376-224125... 27 8.8
08_02_1339 + 26252609-26252925,26253025-26253227,26253379-262535... 27 8.8
04_04_1157 - 31333870-31334220,31334440-31334590,31334678-313349... 27 8.8
02_05_1360 + 35942493-35942682,35942799-35942858,35943099-359432... 27 8.8
02_01_0298 + 1998278-1998655,1998836-1999111,1999203-1999271,199... 27 8.8
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56... 27 8.8
01_01_0207 - 1773790-1774215,1775428-1775888,1776177-1776455,177... 27 8.8
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 32.7 bits (71), Expect = 0.13
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = -2
Query: 361 PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 233
PS TP ER S+D PR Y R+RD K+ S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 31.5 bits (68), Expect = 0.31
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 91 RTSLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRTHLDRGD 234
R + A +GK + E E S+QCD T + +S RE +R + G+
Sbjct: 429 RAAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSREKKRNPYAAAGE 476
>01_01_0870 - 6789903-6792251
Length = 782
Score = 28.7 bits (61), Expect = 2.2
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = +3
Query: 9 GPFGSCTRPSGRWCEAPSAGLCLTPLRPNQPSRIRQGYAHCGAPR 143
G FG+CT G CE C+ P+ P R GY G R
Sbjct: 282 GDFGACTAGGGGGCE------CVDGFTPSYPDEWRLGYFVTGCSR 320
>01_06_0695 - 31292622-31293317
Length = 231
Score = 28.3 bits (60), Expect = 2.9
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = -2
Query: 409 PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 275
P L Q D PS++ SST S P HR L P R
Sbjct: 3 PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47
>08_02_0104 +
12404890-12405129,12405244-12405333,12405953-12406036,
12406888-12407132,12409032-12409095,12409270-12409968,
12410063-12410176,12410287-12410418,12410594-12410770,
12411085-12411138,12411230-12411292,12411396-12412307,
12412408-12412535,12413680-12413962
Length = 1094
Score = 27.9 bits (59), Expect = 3.8
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = -2
Query: 415 ESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSI 236
+SPG L R HD +L KSST + R E SR +KT+S+
Sbjct: 734 DSPGDSL---RDVHDISLNLKLSLDSEKSSTKENSVRRNLEDAVQKLSRGVSANRKTESV 790
Query: 235 D 233
+
Sbjct: 791 E 791
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 27.9 bits (59), Expect = 3.8
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -2
Query: 358 STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDS-IDLRDPNGFDXASR 197
S +PR+ R YS R R+ RD+R ++++ S D R P G SR
Sbjct: 143 SPSPRRGRSRGRSYSRSRSRSYSRSQSPRRDSRNERRSRSPRDSRSPRGSPRDSR 197
>10_08_0113 - 14896341-14897153
Length = 270
Score = 27.1 bits (57), Expect = 6.7
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 4/27 (14%)
Frame = +2
Query: 293 LSSMSGLGIVCRRL----PFLAGCCAR 361
L++++GLGI RR P LAGCC R
Sbjct: 181 LAAIAGLGIPWRRSWPSPPSLAGCCCR 207
>07_01_1214 -
11583510-11583653,11585063-11585148,11585234-11585316,
11585415-11585572,11587083-11587243,11588058-11588279,
11588553-11588677,11589538-11589656,11589961-11590020,
11590292-11590370,11591936-11592100,11592632-11592660,
11593439-11593500,11594724-11594859,11594999-11595161,
11595245-11595384,11597811-11597899,11598914-11599001,
11599558-11599658,11599711-11599859,11600769-11600870,
11601888-11601973,11602064-11602309
Length = 930
Score = 27.1 bits (57), Expect = 6.7
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +3
Query: 18 GSCTRPSGRWCEAPSAGLCLTPLRPNQPSR--IRQGYAH 128
G C++ G G TP PN PS +R+G+AH
Sbjct: 484 GGCSQQDGDLLICYCLGFSFTPSIPNIPSAWVLRRGFAH 522
>06_03_1200 -
28352647-28352712,28353097-28353216,28353314-28353466,
28354652-28354804,28354890-28354967
Length = 189
Score = 27.1 bits (57), Expect = 6.7
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 233 SPRSKWVRRRVSRFECETRLVKSH 162
+P S+WV +V+ + CE L H
Sbjct: 119 APGSRWVATKVTGYRCELELTADH 142
>01_06_0723 + 31501900-31502808,31502846-31503295
Length = 452
Score = 27.1 bits (57), Expect = 6.7
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -2
Query: 409 PGAGLSLNRSQHDAALPSTTPRQERKS-STDYSEP 308
PG L + DAA +TT +++R++ DYS P
Sbjct: 93 PGRALGFFHKEQDAAAVATTRKRKRRAIIVDYSTP 127
>09_06_0342 +
22410674-22411060,22412219-22412299,22412376-22412579,
22412765-22412959,22413064-22413228,22413501-22413761,
22413908-22414126,22414285-22414504,22414591-22414613,
22414728-22414766
Length = 597
Score = 26.6 bits (56), Expect = 8.8
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = -1
Query: 218 WVRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSA 102
W + F+C R ++ ++RG T+ PDSA
Sbjct: 335 WKYPGIGEFQCYDRYLQKSLRRAAEARGHTIWARAPDSA 373
>08_02_1339 +
26252609-26252925,26253025-26253227,26253379-26253536,
26253802-26253870,26253980-26254461,26254558-26254766,
26254865-26254901,26254991-26255075,26255186-26255269,
26255344-26255412,26255520-26255663
Length = 618
Score = 26.6 bits (56), Expect = 8.8
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 106 ESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRTHL 222
+S K + E G KQC +RVS S R R +T L
Sbjct: 580 KSKKKINEASSNEGAGQKQCYRDTRVSVSTRVRRGKTQL 618
>04_04_1157 -
31333870-31334220,31334440-31334590,31334678-31334909,
31335001-31335211,31335517-31335635,31335720-31335953,
31336000-31336201,31336297-31336676,31336792-31336856,
31337362-31337427,31337883-31337957,31338233-31338304,
31338994-31339062,31339150-31339221,31339325-31339396,
31339791-31339862,31339947-31340018,31340474-31340545,
31340645-31340828,31341474-31341588
Length = 961
Score = 26.6 bits (56), Expect = 8.8
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +2
Query: 113 ARICSLWSPESREALNNVTLLVAFRIQNARRXVEPIWIAE 232
A +C+ WSP R ++ V ++A ++ +P +I E
Sbjct: 878 ALLCTQWSPHQRAPMSRVVSMLAGDVEVPDVLTKPSYITE 917
>02_05_1360 +
35942493-35942682,35942799-35942858,35943099-35943217,
35945405-35945449,35945598-35945676,35945777-35945838,
35945932-35946037,35946193-35946253,35947097-35947167,
35947459-35947598,35947887-35947994
Length = 346
Score = 26.6 bits (56), Expect = 8.8
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Frame = +2
Query: 119 ICSLWSPESR----EALNNVTLLVAFRIQNARRXVEPIWIAEIDAIGFF 253
I + WSPE + E+ NVT V I NA P AIGF+
Sbjct: 116 ISTRWSPEIKKEIKESRINVTSKVVNYINNASGDARPSVFVSATAIGFY 164
>02_01_0298 +
1998278-1998655,1998836-1999111,1999203-1999271,
1999881-2000073,2000161-2000555
Length = 436
Score = 26.6 bits (56), Expect = 8.8
Identities = 19/56 (33%), Positives = 23/56 (41%)
Frame = +1
Query: 103 AESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRTHLDRGDRCYRFFS*HVHH 270
A +GK R+ GSK+ + H KR TR D G YR S H H
Sbjct: 40 AAAGKGTSKARARDKDGSKRQQRRALEEHLKRRTRSGAAFDAG--LYRRHS-HAEH 92
>02_01_0083 -
566201-567127,567223-567464,567623-567880,568173-568298,
568420-568489
Length = 540
Score = 26.6 bits (56), Expect = 8.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 113 ARICSLWSPESREALNNVTLLVAFRIQNARR 205
AR C W PESR ++ V ++A ++R+
Sbjct: 449 ARECLQWEPESRPTMSEVVQILATIAPSSRK 479
>01_01_0207 -
1773790-1774215,1775428-1775888,1776177-1776455,
1776601-1776724,1776811-1777020
Length = 499
Score = 26.6 bits (56), Expect = 8.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 177 SRFAFKTRDAXSNPFGSRRSMLS 245
+RFAF+ DA + P + R MLS
Sbjct: 109 TRFAFRATDANATPVSTYRGMLS 131
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,491,678
Number of Sequences: 37544
Number of extensions: 292749
Number of successful extensions: 984
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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