Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0288
(440 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41266| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.97
SB_30758| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_21417| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_52674| Best HMM Match : Peptidase_A17 (HMM E-Value=3.9e-07) 29 2.2
SB_47075| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.0
SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009) 28 3.0
SB_6472| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.0
SB_59217| Best HMM Match : TRAUB (HMM E-Value=0.25) 28 3.9
SB_47089| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_17567| Best HMM Match : DnaJ (HMM E-Value=0.0007) 27 5.2
SB_17881| Best HMM Match : Tubulin (HMM E-Value=0) 27 5.2
SB_11668| Best HMM Match : rve (HMM E-Value=6.2e-14) 27 6.9
SB_39786| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_39530| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_31804| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_616| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
>SB_41266| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 660
Score = 29.9 bits (64), Expect = 0.97
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = -2
Query: 358 STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDP 221
STT E +SSTD EP + + + +RD R ++ D RDP
Sbjct: 195 STTETSETQSSTDTREPVNNRDTRETVNNRDTR--DTVNNRDTRDP 238
Score = 26.6 bits (56), Expect = 9.1
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -2
Query: 355 TTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDP 221
TT E +S+TD +P + + + +RD R ++ D RDP
Sbjct: 92 TTETPETQSTTDTRDPVNNRDTRDPINNRDTR--DPVNNTDTRDP 134
>SB_30758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 424
Score = 29.5 bits (63), Expect = 1.3
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -2
Query: 385 RSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDL 230
RS D ST R S+ S+P+ EL+ R++ A ++ TD + L
Sbjct: 218 RSYQDLHRQSTPQHGRRGSTQQSSQPKFVNELFYKQRAKSAHSQRPTDKLHL 269
>SB_21417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 487
Score = 29.5 bits (63), Expect = 1.3
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -2
Query: 400 GLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKK 251
G S+ RS D A+ T PR ++ P P++ SRD +K
Sbjct: 300 GPSIARSHSDWAITRTKPRNRERAPESSQAPNDEAGKNPEVVSRDTMAQK 349
>SB_52674| Best HMM Match : Peptidase_A17 (HMM E-Value=3.9e-07)
Length = 729
Score = 28.7 bits (61), Expect = 2.2
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +3
Query: 42 RWCEAPSAGLCLTPLRPNQPSRIRQGYAHCGAPRVG 149
RW + +AGLC LRP + Q C PR G
Sbjct: 77 RWTQVKNAGLCFNCLRPTNANHYSQ---VCRQPRCG 109
>SB_47075| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 49
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 133 EPRESGGSKQCDFTSRVSHSKRETRRRTHL 222
EP+E+ KQC F++ + +R R RT+L
Sbjct: 16 EPQENDQKKQCKFSAFGTFFRRHARNRTNL 45
>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3176
Score = 28.3 bits (60), Expect = 3.0
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -2
Query: 358 STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKK 248
S QER++ D + PRH EL PD+R D RV ++
Sbjct: 1453 SRVESQERQTMRD-TRPRHPDELRPDIR-HDIRVAQE 1487
>SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009)
Length = 888
Score = 28.3 bits (60), Expect = 3.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 393 VSTDRSTTLLYRAQHPARNGSRLQTIPSPD 304
+ T ST +R HP + S +QT+PS D
Sbjct: 168 IQTLPSTDSAHRTDHPTQTESTVQTLPSTD 197
>SB_6472| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 91
Score = 28.3 bits (60), Expect = 3.0
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -2
Query: 361 PSTTPRQERKSSTDYSE-PRHRTELYPD 281
P+T PR +R+S T S+ RH + L PD
Sbjct: 8 PNTIPRSDRRSRTGISQRHRHTSSLTPD 35
>SB_59217| Best HMM Match : TRAUB (HMM E-Value=0.25)
Length = 626
Score = 27.9 bits (59), Expect = 3.9
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = -2
Query: 382 SQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDP 221
++ AAL S P+ E STD S +H T+L L S D+ + D+ +P
Sbjct: 434 AESKAALLSNLPK-ESGPSTDSSISQHSTDLVSTLESGDSSTFAQDKPADVVEP 486
>SB_47089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 492
Score = 27.9 bits (59), Expect = 3.9
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = -2
Query: 382 SQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDP 221
++ AAL S P+ E STD S +H T+L L S D+ + D+ +P
Sbjct: 89 AESKAALLSNLPK-ESGPSTDSSISQHSTDLVSTLESGDSSTFAQDKPADVVEP 141
>SB_17567| Best HMM Match : DnaJ (HMM E-Value=0.0007)
Length = 831
Score = 27.5 bits (58), Expect = 5.2
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = -2
Query: 382 SQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRD 224
S HD S +P ++ + + SEPR + + +P R+ + + D+ D D
Sbjct: 475 SNHDRVNNSQSPSEQPLNQANGSEPRKQKKQFPMERTTNIQPNGSGDNHDRED 527
>SB_17881| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 458
Score = 27.5 bits (58), Expect = 5.2
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 17 WFMHSAERPVVRSSIRGIMPDASKAEPA*PNPARICSL 130
+F+ S++R SIR +P+A P PN RI SL
Sbjct: 19 YFVKSSQRESDMESIRKNLPNALNKLPTTPNKFRILSL 56
>SB_11668| Best HMM Match : rve (HMM E-Value=6.2e-14)
Length = 597
Score = 27.1 bits (57), Expect = 6.9
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -1
Query: 410 TWRRAESQQIAARRCSTEHNTPPGT 336
TWRR +QI R CS+E N P T
Sbjct: 502 TWRR-HVEQIRPRYCSSEDNEPNDT 525
>SB_39786| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 294
Score = 26.6 bits (56), Expect = 9.1
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -2
Query: 355 TTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDP 221
TT E +S+TD +P + + + +RD R ++ D RDP
Sbjct: 92 TTETPETQSTTDTRDPVNNRDTRDPINNRDTR--DPVNNTDTRDP 134
>SB_39530| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1323
Score = 26.6 bits (56), Expect = 9.1
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -2
Query: 106 RLGWFGLRGVRHNPADGASHHRPLGRVHEP--NGPK 5
RLGW + + NPAD ASH P + E NGP+
Sbjct: 979 RLGWRYV-DTKSNPADFASHGLPTDHLLEKEWNGPE 1013
>SB_31804| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2047
Score = 26.6 bits (56), Expect = 9.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 301 RTELYPDLRSRDARVKKKTDSIDLRDPNGFDXA 203
R + Y DL SRD ++K D+ + P FD A
Sbjct: 502 RIQEYSDLISRDPFIQKTLDTCEHDSPGCFDTA 534
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 26.6 bits (56), Expect = 9.1
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -2
Query: 394 SLNRSQHDAALPSTTPRQERKSSTDYSEPRHR 299
S +R + D+ PS PR+ RKS + S PR R
Sbjct: 904 SPSRRRRDSPTPSPPPRRRRKSPSP-SPPRRR 934
>SB_616| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1515
Score = 26.6 bits (56), Expect = 9.1
Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Frame = -2
Query: 424 LFYESPGAGLSLNRSQHDAALPSTT---PRQERKSSTDYSEPRHRTELYPDLRSR-DARV 257
LF+ P A + + +A TT PR++ T EP +TE Y R V
Sbjct: 574 LFHNPPRAKDDPPKELNSSAGEGTTEGPPRRDHAQGTRGGEPHRQTEQYATFSERATGTV 633
Query: 256 KKKTDSIDLRDPNG 215
S+ L PNG
Sbjct: 634 LLHVVSVKLIAPNG 647
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,902,450
Number of Sequences: 59808
Number of extensions: 317858
Number of successful extensions: 991
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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