Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0288
         (440 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.37 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   3.4  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              21   4.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   6.0  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   7.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   7.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   7.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.9  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.0 bits (52), Expect = 0.37
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -2

Query: 394 SLNRSQHDAALPSTTPRQERKSST 323
           ++N+ Q   +   TTP++ERK++T
Sbjct: 776 NVNKEQSPNSTKETTPKKERKTAT 799


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 393 VSTDRSTTLLYRAQHPARNGSRLQTIPSP 307
           VS DR++ + YR  +PA     +Q+ PSP
Sbjct: 416 VSPDRTSPMEYRLYNPA----LIQSQPSP 440


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 51  RTTGRSAECMNQMVRNC 1
           RTT   +E +N++V NC
Sbjct: 87  RTTKLDSEQVNRLVNNC 103


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 392 SQQIAARRCSTEHNTPPGT 336
           S Q + +R STE   P GT
Sbjct: 534 SGQTSVQRASTEFGIPTGT 552


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 325 TDYSEPRHRTELYPDLRSRDARVKKKTDSIDL 230
           T  SE    + L+P L SRD    ++ ++++L
Sbjct: 407 TSASELVESSVLFPSLDSRDELHPRELEAVNL 438


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -2

Query: 349 PRQERKSSTDYSEPRHRTELYPD 281
           PR+ R+  T+Y E R++ + + +
Sbjct: 405 PREMRQRITEYFEHRYQGKFFDE 427


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -2

Query: 349 PRQERKSSTDYSEPRHRTELYPD 281
           PR+ R+  T+Y E R++ + + +
Sbjct: 373 PREMRQRITEYFEHRYQGKFFDE 395


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 342 RNGSRLQTIPSPDIEL 295
           RNG+ L+T+  P+I +
Sbjct: 346 RNGADLETLNEPEIRV 361


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 9/39 (23%), Positives = 18/39 (46%)
 Frame = -2

Query: 349  PRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 233
            P+Q+++      + + +   YPDL +  A    K  + D
Sbjct: 1450 PQQQQQQQQQQQQQQQQLNHYPDLHNLYAVPTDKKSACD 1488


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,839
Number of Sequences: 438
Number of extensions: 2531
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11450997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)